[maker-devel] fasta/gff3_merge problem

[Carson Holt]

If it is just printing out the usage statement, then you have something wrong with your command line.

If you are getting no results back, then you have no gene models (you may have failed to provide an HMM for the gene predictors.).

Thanks,
Carson


> On Jun 1, 2016, at 1:22 PM, Qihua Liang <qlian003 at ucr.edu> wrote:
> 
> Hi Maker developers,
> 
> I am trying to get merged fasta/gff3 results. gff3_merge works perfect, but for the same datastore_index.log file, fast_merge doesn’t work as expect. There is no explicit error messages, but printing out 
> Synopsis:
> 
> fasta_merge -d maker_datastore_index.log
> fasta_merge -o genome.all -i <fasta1> <fasta2> ...
> Actually, I do run as the synopsis indicates, and similar steps work for gff3_merge and I could get the gff3 file. 
> 
> Is it any explicit reason for this error?
> 
> Thanks
> Qihua
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