[maker-devel] No genes predicted by Fgenesh in MAKER

[Daniel Ence]

Hi Chan, Fgenesh is a gene predictor that requires users to purchase parameter files from their company: http://www.softberry.com/. If you didn’t give a Fgenesh file, then you won’t get any predictions.

~Daniel


Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

On Mar 1, 2016, at 12:45 AM, Chan Kuang Lim <chankl at mpob.gov.my<mailto:chankl at mpob.gov.my>> wrote:

Dear MAKER developers,

I am using MAKER 2.31.8, with SNAP, AUGUSTUS and Fgenesh. I have tested my sequences, with many different parameters. MAKER output gives genes predicted by SNAP and AUGUSTUS, but no genes predicted by Fgenesh. I do not get any error message. The sequences FINISHED successful. May I know what are the possible mistake I have done?

Thank you.

Regards,
Chan KL

________________________________

Come and join us on:

 [http://webmail.mpob.gov.my:8080/image-footer/pipoc17.jpg] <http://pipoc.mpob.gov.my/>

  1.  Journal of Oil Palm Research is now available free online at http://jopr.mpob.gov.my
  2.  22nd MPOB Transfer of Technology Seminar 2016 (2 June 2016)<http://mpob.gov.my/en/events/conferences-seminars/12448-22nd-mpob-transfer-of-technology-seminar-2016-2-june-2016>
  3.  Persidangan Pekebun Kecil Sawit Kebangsaan 2016 (11 - 12 Oktober 2016)
<http://www.mpob.gov.my/en/events/conferences-seminars/11407-persidangan-pekebun-kecil-sawit-kebangsaan-2016-11-12-oktober-2016>

[http://webmail.mpob.gov.my:8080/image-footer/facebook-logo.jpg]

Malaysian Palm Oil Board - http://www.mpob.gov.my<http://www.mpob.gov.my/>
This email was sent using MPOB Webmail System.

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20160302/5a04fdbc/attachment-0003.html>