[maker-devel] ERROR: RepeatMasker failed

[Carson Holt]

Hi Wenbo,

The error is from RepeatMasker and not MAKER. It means that RepeatMasker is not installed and configured correctly.  You will have to fix whatever is wrong with your installation, and then make sure you can get RepeatMasker to run correctly by itself before running it inside of MAKER (i.e. run RepeatMasker directly on some test data).

Thanks,
Carson


> On Mar 5, 2016, at 7:10 PM, 陈文博 <chenwenbo1020 at gmail.com> wrote:
> 
> Hi All,
> 
> I have run Maker (v2.31.8) successfully. Now I update RepeatMasker to v4.0.6. then I came with this error:
> 
> RepeatMasker::createLib(): Error invoking /home/chenwb/programs/ncbi-blast-2.2.28+/bin/makeblastdb on file /home/chenwb/programs/RepeatMasker/Libraries/20150807/general/simple.lib.
> ERROR: RepeatMasker failed
> --> rank=4, hostname=hostname
> ERROR: Failed while doing repeat masking
> ERROR: Chunk failed at level:0, tier_type:1
> FAILED CONTIG:scaffold149
> 
> 
> The RepeatMasker was corrected installed. Should I update Maker to V3.0?
> 
> Thank you!
> 
> Best regards,
> Wenbo
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