[maker-devel] BUSCO

Xabier Vázquez Campos xvazquezc at gmail.com
Thu May 12 18:31:55 MDT 2016


Check this thread:
https://groups.google.com/forum/#!topic/maker-devel/vp8R06VVQGQ

On 26 April 2016 at 02:20, Misner, Ian (NIH/NIAID) [C] <ian.misner at nih.gov>
wrote:

> Hello,
>
> Are there any guidelines for using BUSCO to help train MAKER? CEGMA has
> been discontinued but I used to use the cegma2zff.pl steps to use those
> proteins as a training step. BUSCO seems to train Augustus but I'm not sure
> what file to pass from BUSCO to MAKER for this to be properly utilized. I
> didn't see anything specific about this in the archives.
> -----
>
> *Ian Misner, Ph.D.*
>
> Computational Genomics Specialist
>
> Contractor, Medical Science and Computing, Inc.
>
> Bioinformatics and Computational Biosciences Branch (BCBB)
>
> NIH/NIAID/OD/OSMO/OCICB
>
> 5601 Fishers Lane, Room 4A59
>
> Rockville, MD 20892
>
> Office: 301-761-6208
>
> Mobile: 301-704-0151
>
> Email: ian.misner at nih.gov
>
> Web: BCBB Home Page
> <http://www.niaid.nih.gov/about/organization/odoffices/omo/ocicb/Pages/bcbb.aspx#niaid_inlineNav_Anchor>
> Twitter: @NIAIDBioIT
>
>
>
> Disclaimer: The information in this e-mail and any of its attachments is
> confidential and may contain sensitive information. It should not be used
> by anyone who is not the original intended recipient. If you have received
> this e-mail in error please inform the sender and delete it from your
> mailbox or any other storage devices. National Institute of Allergy and
> Infectious Diseases shall not accept liability for any statements made that
> are sender's own and not expressly made on behalf of the NIAID by one of
> its representatives.
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>


-- 
Xabier Vázquez-Campos, *PhD*
*Research Associate*
Water Research Centre
School of Civil and Environmental Engineering
The University of New South Wales
Sydney NSW 2052 AUSTRALIA
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20160513/0bf539db/attachment-0002.html>


More information about the maker-devel mailing list