[maker-devel] Reformat maker gff3

[Xabier Vázquez Campos]

Can't you filter the file content with the 'grep' command? If you need to
extract columns, use 'cut' too

On 13 April 2016 at 13:05, Jenny Lee <h.lee12 at uq.edu.au> wrote:

> Hi all,
>
>
> I would like to update my maker gff3 file to only contain the genes I've
> decided to keep - all maker genes, a subset of abinitio genes (which
> have interproscan hits). I would like to also exclude the repeats
> information and only retain the CDS, gene, exon and mRNA - like the
> format we usually see in published data.
>
>
> I've been trying to do this manually and it gets messy. Any ideas?
>
>
> Thanks a lot.
>
>
> Regards,
>
> Jenny Lee
>
>
>
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>
>


-- 
Xabier Vázquez-Campos, *PhD*
*Research Associate*
Water Research Centre
School of Civil and Environmental Engineering
The University of New South Wales
Sydney NSW 2052 AUSTRALIA
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