[maker-devel] maker-devel Digest, Vol 96, Issue 10

[David Price]

would it be possible to get digest mode set up properly?
I have it selected but I get emails for each individual message.

Thanks

On Fri, May 13, 2016 at 10:27 AM, <maker-devel-request at yandell-lab.org>
wrote:

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>    1. Re: Reformat maker gff3 (Michael Campbell)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 13 May 2016 11:34:00 -0400
> From: Michael Campbell <michael.s.campbell1 at gmail.com>
> To: Xabier V?zquez Campos <xvazquezc at gmail.com>
> Cc: Jenny Lee <h.lee12 at uq.edu.au>,      "maker-devel at yandell-lab.org"
>         <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] Reformat maker gff3
> Message-ID: <777D8DFF-CB99-4F03-A4CF-8E52F0E4526A at gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> I?ve attached a protocols paper that walks through what you are trying to
> do. Let me know if it helps.
> Mike
>
> > On May 12, 2016, at 8:37 PM, Xabier V?zquez Campos <xvazquezc at gmail.com>
> wrote:
> >
> > Can't you filter the file content with the 'grep' command? If you need
> to extract columns, use 'cut' too
> >
> > On 13 April 2016 at 13:05, Jenny Lee <h.lee12 at uq.edu.au <mailto:
> h.lee12 at uq.edu.au>> wrote:
> > Hi all,
> >
> > I would like to update my maker gff3 file to only contain the genes I've
> decided to keep - all maker genes, a subset of abinitio genes (which have
> interproscan hits). I would like to also exclude the repeats information
> and only retain the CDS, gene, exon and mRNA - like the format we usually
> see in published data.
> >
> > I've been trying to do this manually and it gets messy. Any ideas?
> >
> > Thanks a lot.
> >
> > Regards,
> > Jenny Lee
> >
> >
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> >
> >
> >
> > --
> > Xabier V?zquez-Campos, PhD
> > Research Associate
> > Water Research Centre
> > School of Civil and Environmental Engineering
> > The University of New South Wales
> > Sydney NSW 2052 AUSTRALIA
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