[maker-devel] MAKER (v2.31.6) incorrect strand for tRNA-scan (v.1.3.1) predicted exon

[Jeremy DeBarry]

Greetings,
     My group has run MAKER on a small genome.  One of the annotated tRNAs
has an intron.  The two exons are annotated on different strands. The gene
and first exon are on the + strand and the second exon is on the - strand.

    I looked over the archives and found previous reports
<https://groups.google.com/forum/#!searchin/maker-devel/trnascan$20strand/maker-devel/n09EMqCP_Do/08AJuaZ1K9QJ>,
but it appears they apply to earlier versions of MAKER.

     My instinct is to 'manually' correct the strand information for the -
strand exon, but I wanted to investigate the issue further first.

     Do you have any insight?

Much appreciated,
Jeremy

--
Dr. Jeremy DeBarry PhD <http://orcid.org/0000-0001-5718-2675>
MaHPIC Data Coordinator <http://www.systemsbiology.emory.edu/>
Kissinger Research Group
<http://mango.ctegd.uga.edu/jkissingLab/>
The University of Georgia <http://www.uga.edu/>
:::
Email: debarryj at gmail.com
Tel: +1.912.269.0484
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Nihil Sine Labore!:::Nec Aspera Terrent!:::Boutez-en-Avant!
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