[maker-devel] maker-devel Digest, Vol 96, Issue 10

[Carson Holt]

I toggled off and back on your digest option incase that is the issue.

The Mailman docs say that on busy days the digest option may decide to send out more than one digest, so that could be the issue too.

The company providing out mail list was having issues the last few weeks, so we weren’t able to approve most posts until yesterday. As a result, there was an explosion of approved posts that may have triggered the digest to be more than 1 per day yesterday and today.

—Carson



> On May 13, 2016, at 10:35 AM, David Price <dave.p.price at gmail.com> wrote:
> 
> would it be possible to get digest mode set up properly?
> I have it selected but I get emails for each individual message.
> 
> Thanks
> 
> On Fri, May 13, 2016 at 10:27 AM, <maker-devel-request at yandell-lab.org <mailto:maker-devel-request at yandell-lab.org>> wrote:
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> Today's Topics:
> 
>    1. Re: Reformat maker gff3 (Michael Campbell)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Fri, 13 May 2016 11:34:00 -0400
> From: Michael Campbell <michael.s.campbell1 at gmail.com <mailto:michael.s.campbell1 at gmail.com>>
> To: Xabier V?zquez Campos <xvazquezc at gmail.com <mailto:xvazquezc at gmail.com>>
> Cc: Jenny Lee <h.lee12 at uq.edu.au <mailto:h.lee12 at uq.edu.au>>,      "maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>"
>         <maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>>
> Subject: Re: [maker-devel] Reformat maker gff3
> Message-ID: <777D8DFF-CB99-4F03-A4CF-8E52F0E4526A at gmail.com <mailto:777D8DFF-CB99-4F03-A4CF-8E52F0E4526A at gmail.com>>
> Content-Type: text/plain; charset="utf-8"
> 
> I?ve attached a protocols paper that walks through what you are trying to do. Let me know if it helps.
> Mike
> 
> > On May 12, 2016, at 8:37 PM, Xabier V?zquez Campos <xvazquezc at gmail.com <mailto:xvazquezc at gmail.com>> wrote:
> >
> > Can't you filter the file content with the 'grep' command? If you need to extract columns, use 'cut' too
> >
> > On 13 April 2016 at 13:05, Jenny Lee <h.lee12 at uq.edu.au <mailto:h.lee12 at uq.edu.au> <mailto:h.lee12 at uq.edu.au <mailto:h.lee12 at uq.edu.au>>> wrote:
> > Hi all,
> >
> > I would like to update my maker gff3 file to only contain the genes I've decided to keep - all maker genes, a subset of abinitio genes (which have interproscan hits). I would like to also exclude the repeats information and only retain the CDS, gene, exon and mRNA - like the format we usually see in published data.
> >
> > I've been trying to do this manually and it gets messy. Any ideas?
> >
> > Thanks a lot.
> >
> > Regards,
> > Jenny Lee
> >
> >
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> >
> >
> >
> >
> > --
> > Xabier V?zquez-Campos, PhD
> > Research Associate
> > Water Research Centre
> > School of Civil and Environmental Engineering
> > The University of New South Wales
> > Sydney NSW 2052 AUSTRALIA
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