[maker-devel] MAKER (v2.31.6) incorrect strand for tRNA-scan (v.1.3.1) predicted exon

[Carson Holt]

Make sure your using the current version of MAKER. That same thread mentions it was fixed once they updated from 2.31.3

Current version is 2.31.8.

—Carson



> On May 26, 2016, at 1:54 PM, Jeremy DeBarry <debarryj at gmail.com> wrote:
> 
> Greetings,
>      My group has run MAKER on a small genome.  One of the annotated tRNAs has an intron.  The two exons are annotated on different strands. The gene and first exon are on the + strand and the second exon is on the - strand.
> 
>     I looked over the archives and found previous reports <https://groups.google.com/forum/#!searchin/maker-devel/trnascan$20strand/maker-devel/n09EMqCP_Do/08AJuaZ1K9QJ>, but it appears they apply to earlier versions of MAKER.
> 
>      My instinct is to 'manually' correct the strand information for the - strand exon, but I wanted to investigate the issue further first.
> 
>      Do you have any insight?
> 
> Much appreciated,
> Jeremy
> 
> --
> Dr. Jeremy DeBarry PhD <http://orcid.org/0000-0001-5718-2675>
> MaHPIC Data Coordinator <http://www.systemsbiology.emory.edu/>
> Kissinger Research Group
>  <http://mango.ctegd.uga.edu/jkissingLab/>
> The University of Georgia <http://www.uga.edu/>
> :::
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