[maker-devel] map_fasta_ids : No mapping available...

[Mohamed Amine Chebbi]

Hello ! 

I'am attempting to rename genes of maker.proteins.fasta for Genebank submission using the map_fasta_ids script. It seems to work correctly for the major of gene models, except to those ones having the below warning message : 

WARNING: No mapping available for maker-scaffold_1710-augustus-gene-0.3-mRNA-1 
WARNING: No mapping available for maker-scaffold_1710-augustus-gene-0.0-mRNA-1 
WARNING: No mapping available for maker-scaffold_1710-snap-gene-0.6-mRNA-1 
WARNING: No mapping available for maker-scaffold_1710-augustus-gene-0.4-mRNA-1 
WARNING: No mapping available for maker-scaffold_1734-augustus-gene-0.1-mRNA-1 
WARNING: No mapping available for maker-scaffold_1734-augustus-gene-0.2-mRNA-1 
WARNING: No mapping available for maker-scaffold_1734-augustus-gene-0.0-mRNA-1 
WARNING: No mapping available for maker-scaffold_1734-augustus-gene-0.5-mRNA-1 
WARNING: No mapping available for maker-scaffold_1734-augustus-gene-0.6-mRNA-1 
WARNING: No mapping available for maker-scaffold_1734-snap-gene-0.15-mRNA-1 
WARNING: No mapping available for maker-scaffold_1734-snap-gene-0.16-mRNA-1 

Looking into the maker.gff file, these gene names are missing and may be replaced by other ones which differ by the numbers following the gene predictor. 

I wounder if you can explain me the reason of these warning message and how to resolve it. 

Thank you , 

Best, 
Amine 
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