[maker-devel] ATG strict start codon usage query

[Robert King]

Hi,

I'm using latest version of Maker2 but when I use it I get CTG and TTG as start codons of which I don't want. Reading threads, the bioperl CodonTable.pm has been changed to allow for strict setting so that only ATG is used. My question is how to invoke this functionality? I've looked in maker ctrl files and command line maker but don't see how to get it just to use ATG as the start codon. Can you please advise.

Best wishes
Rob
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