[maker-devel] Filter transcripts to improve annotation quality ?

[Mohamed Amine CHEBBI]

Indeed the gene count has been done by the command grep -P -c "\tgene\t" 
models.gff.

I would be careful about repeats, however in the strategy I'm not 
convinced by the step of searching the sequencesin 
Modelerunknown.lib  against a transposase database, as it has been done 
yet by the RepeatModeler against the repbase . So I think skip this step.

A last question, how to create a Protein database excluding the 
transposases.

Thank you again.

Best,

Amine



Le 27/10/2016 à 17:08, Carson Holt a écrit :
> not to cou

-- 
Mohamed Amine CHEBBI, PhD Student
Université de Poitiers
Laboratoire Ecologie et Biologie des Interactions - UMR CNRS 7267
Equipe Ecologie Evolution Symbiose
Bât. B8-B35 - 5 Rue Albert Turpin
TSA 51106
F-86022 Poitiers Cedex 9
FRANCE
Lab website: http://ecoevol.labo.univ-poitiers.fr/

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