[maker-devel] MAKER Exonerate Error

[Carson Holt]

This is coming from exonerate. You may need to reinstall it from source rtather than using the precompiled binaries.

—Carson

> On Sep 1, 2016, at 1:44 PM, Emilio A. Alvarado Ortiz <eaalvarado at cpp.edu> wrote:
> 
> Hello,
>  
> I am currently running MAKER version 2.31.8 using MPI but I keep getting the following error when running Exonerate:
>  
> Maker command used: mpiexec -mca btl ^openib -n 16 maker
>  
> ** (process:18773): WARNING **: Compiled with assertion checking - will run slowly
> **
> ERROR:protein2genome.c:25:Protein2Genome_Data_create: assertion failed: (target->alphabet->type == Alphabet_Type_DNA)
> sh: line 1: 18771 Aborted                 /usr/bin/exonerate -q /media/raid/tmp/maker_DYrlgS/9/gi%7C565342117%7Cref%7CXP_006338208%2E1%7C.for.21933-23968
> ** (process:18775): WARNING **: Compiled with assertion checking - will run slowly
> .9.fasta -t /media/raid/tmp/maker_DYrlgS/9/13225915.21933-23968.9.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /media/raid/tmp/maker_DYrlgS/9/13225915.21933-23968.gi%7C565342117%7Cref%7CXP_006338208%2E1%7C.p.exonerate
> **
>  
> Attached is the Error log  and the maker_opts.ctl file. Do you know a workaround this problem? I would really appreciate your help.
>  
>  
>  
> Regards,
>  
> Emilio A. Ortiz 
> <image001.png> <https://www.linkedin.com/in/ortizem>
>  
> <MAKER.error.log><maker_opts.ctl>_______________________________________________
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