[maker-devel] maker putting _Inline directory wherever it is run

[Carson Holt]

You have either moved directories post installation, are trying to run from the …/maker/src/bin directory instead of …/maker/bin or you had an issue during install. You just need to start over and follow the install instructions. The few libraries MAKER must compile with Inline::C will go into …/maker/perl/lib/

—Carson

> From: "Sobel-Sorenson, Chandler - (scar)" <scar at email.arizona.edu>
> Subject: maker putting _Inline directory wherever it is run
> Date: April 6, 2017 at 4:27:03 PM MDT
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> 
> 
> I just installed the latest maker 2.31.9 on our cluster, but whenever we issue the command "maker" (even with no arguments), it creates a "_Inline" directory in the CWD..  I guess this is related to Inline perl module?  For example:
> 
> [smrtanalysis at pac makertest]$ ls -a
> .  ..
> [smrtanalysis at pac makertest]$ maker
> ERROR: Control files not found
> 
> MAKER version 2.31.9
> 
> Usage:
> 
>     maker [options] <maker_opts> <maker_bopts> <maker_exe>
> ...
> 
> [smrtanalysis at pac makertest]$ ls -a
> .  ..  _Inline
> [smrtanalysis at pac makertest]$ ls -a _Inline/
> .  ..  build  config-x86_64-linux-thread-multi-5.010001  lib  .lock
> [smrtanalysis at pac makertest]$ 
> 
> 
> This is some problem with our module installation?  It was installed using "cpanm Inline::C".  Or problem/bug with the module itself should contact the Inline team about?  Or problem with our maker installation?
> 
> 
> Thanks,
> Chandler
> Arizona Genomics Institute
> University Of Arizona
> www.genome.arizona.edu

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