From aircoolsky at gmail.com  Fri Dec  1 00:20:20 2017
From: aircoolsky at gmail.com (Yu-Hsuan Cheng)
Date: Fri, 1 Dec 2017 14:20:20 +0800
Subject: [maker-devel] Changing the genetic code table in MAKER
Message-ID: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>

Hi,

This is YuHsuan Cheng, who is a PhD student from Taiwan. I want to use the
MAKER combining with SNAP to annotate ciliates genome. The genetic code for
ciliates is different from other species, so I am wondering that if there
is any option in MAKER I can change the genetic code table? I also asked
Dr. Korf about this issue, he said SNAP has no way to change the genetic
code table. I will use Augustus combining with Maker later on.
The pipeline I used previously is as followed.
1. MAKER (Hints from proteome and RNAseq)
2. MAKER to Zff
3. ~/bin/maker/exe/snap/hmm-assembler.pl snapFirst . > ../../snapFirst.hmm
and then used snapFirst.hmm as hints in MAKER

Look forward to your reply. Thank you.

Best wishes,

YuHsuan

Yu-Hsuan Cheng ???
Institute of Molecular Biology
Academia Sinica
128 Academia road, Section 2
Nankang, Taipei 115
Taiwan
Phone:+886-2-2789-9216 <+886%202%202789%209216> (Lab), +886-958-216-538
<+886%20958%20216%20538> (Mobile phone)
d02b48008 at ntu.edu.tw
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From carsonhh at gmail.com  Fri Dec  1 09:46:30 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 1 Dec 2017 08:46:30 -0700
Subject: [maker-devel] Changing the genetic code table in MAKER
In-Reply-To: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>
References: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>
Message-ID: <C2D92775-EEDA-48A6-920F-5A8E1A2FCF3A@gmail.com>

Sorry. MAKER does not currently support alternate codon tables.

?Carson


> On Nov 30, 2017, at 11:20 PM, Yu-Hsuan Cheng <aircoolsky at gmail.com> wrote:
> 
> Hi,
> 
> This is YuHsuan Cheng, who is a PhD student from Taiwan. I want to use the MAKER combining with SNAP to annotate ciliates genome. The genetic code for ciliates is different from other species, so I am wondering that if there is any option in MAKER I can change the genetic code table? I also asked Dr. Korf about this issue, he said SNAP has no way to change the genetic code table. I will use Augustus combining with Maker later on. 
> The pipeline I used previously is as followed.
> 
> 1. MAKER (Hints from proteome and RNAseq)
> 2. MAKER to Zff  
> 3. ~/bin/maker/exe/snap/hmm-assembler.pl <http://hmm-assembler.pl/> snapFirst . > ../../snapFirst.hmm
> and then used snapFirst.hmm as hints in MAKER
> 
> Look forward to your reply. Thank you.
> 
> Best wishes,
> 
> YuHsuan 
> 
> Yu-Hsuan Cheng ???
> Institute of Molecular Biology
> Academia Sinica
> 128 Academia road, Section 2
> Nankang, Taipei 115
> Taiwan
> Phone:+886-2-2789-9216 <tel:+886%202%202789%209216> (Lab), +886-958-216-538 <tel:+886%20958%20216%20538> (Mobile phone)
> d02b48008 at ntu.edu.tw <mailto:d02b48008 at ntu.edu.tw>_______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From qwzhang0601 at gmail.com  Fri Dec  1 10:56:27 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Fri, 1 Dec 2017 11:56:27 -0500
Subject: [maker-devel] Pseudogene identification
In-Reply-To: <CAOW6FSJ=Bkqezoy1uAt68Gixfmzxy+NVCq=nf_j0ouDfoSpYog@mail.gmail.com>
References: <CAOW6FSKHVYLK1sn5-YUqVk_ucn3iRUqtjkVoAvpQT==NmK8srw@mail.gmail.com>
	<B1CC1942-5D84-48BE-A4B7-2F9B465B9E2C@gmail.com>
	<CAOW6FSJ=Bkqezoy1uAt68Gixfmzxy+NVCq=nf_j0ouDfoSpYog@mail.gmail.com>
Message-ID: <CAOW6FSL9XY8aRiJZTDVaWwO6qTBiVswmnRJ3r7c=cgqYRaskgA@mail.gmail.com>

Dear Carson:

Thanks again for all your previous help. I am still trying to identify
pseudo genes. For me, I have two goals to identify pseudo genes.
(1) Check which predicted protein coding genes are in fact pseudo genes
(especially I want to check genes belong to gene families, which are found
under expansion in our analyzed geome).
(2) Identify pseudo genes in the intergentic regions.
But the link "
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene" only
describe Identification of pseudo genes in the intergentic regions. I
wonder whether I can simple follow the pipeline and run it on the whole
genome, so I can achieve my two goals above. Or do I need to do some
adjustment of the pipeline?

At beginning, I though the pipeline is only useful to identify pseudo genes
in the intergentic regions, but in the following paper, they mentioned the
pipeline was applied to the whole genome. So I think maybe I can also do
this, but not sure whether I can simply run the same pipeline in the
following link on whole genome ("
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene").

In the paper "MAKER-P: A Tool Kit for the Rapid Creation,Management, and
Quality Control of Plant Genome Annotations". It saids "If the analysis
pipeline is applied to the whole genome, 2.5% and 0.6% of currently
annotated proteincoding genes are identified as pseudogenes due to the
presence of misidentified stops and frame shifts, respectively, indicating
that the false-positive rate of our pipeline is 3.1%."

Many thanks for your help.

Best
Quanwei


2017-08-01 9:32 GMT-04:00 Quanwei Zhang <qwzhang0601 at gmail.com>:

> Hi Carson:
>
> I took a look at the description about the pipe line of pseudogene
> identification. In my understanding it will use the annotated (predicted by
> Maker2) protein coding genes as input (i.e., query sequences), search in
> the intergenic spaces (so annotated genes will not be checked) and find the
> regions where show certain level of similarity to the annotated genes.
>
> If my understanding is correct, I think it is not what I want to do get.
> Based on the annotated coding genes from Maker2, we found some genes are
> under expansion in the new species. We want to check and make sure all the
> gene copies in the expanded gene family really function (to make sure they
> are not pseudogenes).
>
> Do you think the pseudogene identification pipe line of Maker2 can be
> helpful for my goal? Or do you have any suggestions on this?
>
> Many thanks
>
> Best
> Quanwei
>
> 2017-07-31 19:54 GMT-04:00 Carson Holt <carsonhh at gmail.com>:
>
>> The MAKER-P fork was merged back into standard MAKER with version 2.29
>> (roughly 3 years ago - a separate download no longer exists). This is
>> because MAKER-P?s functionality is almost entirely in accessory scripts and
>> written protocols. The ?/maker/bin/maker called by both MAKER2 and MAKER-P
>> is actually the same script. So no need to rerun, because if you are using
>> version 2.29 or later, you already ran it.
>>
>> Pseudogene calling is therefore handled by accessory scripts and
>> protocols you can find here ?> http://shiulab.plantbiology
>> .msu.edu/wiki/index.php/Protocol:Pseudogene
>>
>> The other MAKER-P protocols can be found here ?>
>> http://www.yandell-lab.org/software/maker-p.html
>>
>> --Carson
>>
>>
>>
>> On Jul 31, 2017, at 5:02 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>
>> Hello:
>>
>> We used Maker2 to annotate a new rodent genome. By using the annotated
>> genes we did gene family expansion analysis, and found several gene
>> families under expansion in the new rodent genome. But we want to check
>> whether some annotated genes are Pseudogenes, which lead to the expansion.
>> Do you have any suggestions on this?
>>
>> We found the Maker-P can annotate Pseudogene, but we are not sure whether
>> it is worth to repeat our annotation with Maker-P. Besides, we are not sure
>> whether the default parameters of Maker-P are good for a rodent species.
>> What's more, in my understanding the Maker-P will identify Pseudogenes in
>> the intergenic spaces (which I think the annotated coding genes will be not
>> be tested and checked).
>>
>> Do you have any suggestions to solve our problem? We do not want to
>> identify Pseudogene on the genome wide, but only want to check those genes
>> showing expansion (to make sure all those gene copies really function).
>>
>> Many thanks
>>
>> Best
>> Quanwei
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>>
>
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From patrick.tranvan at unil.ch  Fri Dec  1 14:27:09 2017
From: patrick.tranvan at unil.ch (Patrick Tran Van)
Date: Fri, 1 Dec 2017 20:27:09 +0000
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
Message-ID: <1512160093637.44052@unil.ch>

Hi,


>From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).


So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?

Because I have way more gene with keep_pred=1.


Maybe I missed something.


Thanks.


Patrick
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From carsonhh at gmail.com  Fri Dec  1 15:11:51 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 1 Dec 2017 14:11:51 -0700
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <1512160093637.44052@unil.ch>
References: <1512160093637.44052@unil.ch>
Message-ID: <CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>

keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what?s left to the final gene models. It?s basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.

?Carson


> On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch> wrote:
> 
> Hi,
> 
> From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).
> 
> So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
> Because I have way more gene with keep_pred=1. 
> 
> Maybe I missed something.
> 
> Thanks.
> 
> Patrick 

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From patrick.tranvan at unil.ch  Sun Dec  3 04:08:21 2017
From: patrick.tranvan at unil.ch (Patrick Tran Van)
Date: Sun, 3 Dec 2017 10:08:21 +0000
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
References: <1512160093637.44052@unil.ch>,
	<CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
Message-ID: <1512295765377.75322@unil.ch>

Ok for keep_preds but AED=1 means no support at all or (very) bad support ?


Patrick Tran Van

Groups Chapuisat, Robinson-Rechavi & Schwander
Department of Ecology and Evolution
University of Lausanne
Le Biophore
CH-1015 Lausanne
Switzerland
Office 3206
________________________________
From: Carson Holt <carsonhh at gmail.com>
Sent: Friday, December 1, 2017 10:11 PM
To: Patrick Tran Van
Cc: maker-devel at yandell-lab.org
Subject: Re: Difference between AED=1 and keep_preds=1

keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what's left to the final gene models. It's basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.

-Carson


On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch<mailto:patrick.tranvan at unil.ch>> wrote:

Hi,

>From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).

So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
Because I have way more gene with keep_pred=1.

Maybe I missed something.

Thanks.

Patrick

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From carsonhh at gmail.com  Sun Dec  3 15:09:22 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 3 Dec 2017 14:09:22 -0700
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <1512295765377.75322@unil.ch>
References: <1512160093637.44052@unil.ch>
	<CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
	<1512295765377.75322@unil.ch>
Message-ID: <57EE5EF4-E7B1-4DF3-B4CA-B12531AD93A1@gmail.com>

It means no support at all.

?Carson



> On Dec 3, 2017, at 3:08 AM, Patrick Tran Van <patrick.tranvan at unil.ch> wrote:
> 
> Ok for keep_preds but AED=1 means no support at all or (very) bad support ?
> 
> Patrick Tran Van
> 
> Groups Chapuisat, Robinson-Rechavi & Schwander
> Department of Ecology and Evolution
> University of Lausanne
> Le Biophore
> CH-1015 Lausanne
> Switzerland
> Office 3206
> From: Carson Holt <carsonhh at gmail.com <mailto:carsonhh at gmail.com>>
> Sent: Friday, December 1, 2017 10:11 PM
> To: Patrick Tran Van
> Cc: maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>
> Subject: Re: Difference between AED=1 and keep_preds=1
>  
> keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what?s left to the final gene models. It?s basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.
> 
> ?Carson
> 
> 
>> On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch <mailto:patrick.tranvan at unil.ch>> wrote:
>> 
>> Hi,
>> 
>> From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).
>> 
>> So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
>> Because I have way more gene with keep_pred=1. 
>> 
>> Maybe I missed something.
>> 
>> Thanks.
>> 
>> Patrick 
> 
> 

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From scott at scottcain.net  Thu Dec  7 09:53:16 2017
From: scott at scottcain.net (Scott Cain)
Date: Thu, 7 Dec 2017 10:53:16 -0500
Subject: [maker-devel] MAKER run error
In-Reply-To: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
References: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
Message-ID: <CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>

Hi Guinara,

I don't know (though my guess would be that you're running out of memory).
I'm cc'ing the MAKER developer's mailing list to see if anybody on that
list knows.

Scott


On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <tagirdzh at ualberta.ca>
wrote:

> Hello,
>
> I got this error running maker on mac:
>
> STATUS: Parsing control files...
> STATUS: Processing and indexing input FASTA files...
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> Filesize limit exceeded: 25
>
> Is there anything that could solve it?
>
> Thank you,
> Gulnara
>
>
>


-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research
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From carsonhh at gmail.com  Thu Dec  7 10:00:29 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 09:00:29 -0700
Subject: [maker-devel] MAKER run error
In-Reply-To: <CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>
References: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
	<CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>
Message-ID: <7DAB19A4-573C-4E9E-A208-7352228A502B@gmail.com>

The FASTA file gets indexed by BioPerl using BerkleyDB. I?m guessing there is something odd about your input file and the database has run out of HASHes for indexing. You can google if there is a setting you can configure in BerkleyDB on Mac. But I suspect you are doing something like giving the raw reads from an mRNA-seq experiment or DNA sequencing to MAKER (resulting in billions of entrires to be indexed), which would be incorrect. MAKER can?t handle raw data. You must first assemble it using using like Trinity for example for mRNA.

Thanks,
Carson

> On Dec 7, 2017, at 8:53 AM, Scott Cain <scott at scottcain.net> wrote:
> 
> Hi Guinara,
> 
> I don't know (though my guess would be that you're running out of memory).  I'm cc'ing the MAKER developer's mailing list to see if anybody on that list knows.
> 
> Scott
> 
> 
> On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <tagirdzh at ualberta.ca <mailto:tagirdzh at ualberta.ca>> wrote:
> Hello,
> 
> I got this error running maker on mac:
> 
> STATUS: Parsing control files...
> STATUS: Processing and indexing input FASTA files...
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> Filesize limit exceeded: 25
> 
> Is there anything that could solve it?
> 
> Thank you,
> Gulnara
> 
> 
> 
> 
> 
> -- 
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/ <http://gmod.org/>)                     216-392-3087
> Ontario Institute for Cancer Research
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From jeanne.wilbrandt at web.de  Thu Dec  7 10:13:05 2017
From: jeanne.wilbrandt at web.de (Jeanne Web)
Date: Thu, 7 Dec 2017 17:13:05 +0100
Subject: [maker-devel] [Maker] Gene density threshold?
Message-ID: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>

Dear MAKER developers,

I have wondered whether there is an internal threshold or cutoff value 
for gene density (allowing only x genes in a genomic region of a certain 
size) or gene overlap (requiring to be predictions x bases apart from 
each other)?

We have come to this idea when re-annotating a genome with another gene 
predictor. Several cases of single-exon genes not predicted by MAKER but 
flanked (i.e. close proximity) by MAKER-predictions were observed.

Thus, I'd like to ask: Which factors (apart from sequence/signals and 
evidence/AED) influence the algorithmic prediction decision?

Any help is highly appreciated.
With best wishes
Jeanne Wilbrandt


~~~
Jeanne Wilbrandt, M.sc.
ORCID 0000-0002-0363-3837
~~~
PhD candidate
Leibniz PhD representative, student representative
Leibniz Graduate School on Genomic Biodiversity Research
ZFMK ~ zmb ~ University of Bonn





From carsonhh at gmail.com  Thu Dec  7 10:28:01 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 09:28:01 -0700
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
Message-ID: <EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>

There is no gene density parameter, and for gene overlap there is no distance parameter. Gene overlap on the same strand is not permitted though. If a gene is being excluded because of UTR overlap, you can someone correct for that by setting correct_est_fusion=1. That will trim back the UTR on those cases since this type of exclusion is often caused by false merging of neighboring transcripts during mRNA-seq assembly. Some organisms like fungi do truly have UTR overlap observed some genes, but mRNA-seq reads will assemble into a single transcript, so it?s hard to tease apart. Trimming back the UTR in those cases tends to be the most reliable solution.

?Carson


> On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de> wrote:
> 
> Dear MAKER developers,
> 
> I have wondered whether there is an internal threshold or cutoff value for gene density (allowing only x genes in a genomic region of a certain size) or gene overlap (requiring to be predictions x bases apart from each other)?
> 
> We have come to this idea when re-annotating a genome with another gene predictor. Several cases of single-exon genes not predicted by MAKER but flanked (i.e. close proximity) by MAKER-predictions were observed.
> 
> Thus, I'd like to ask: Which factors (apart from sequence/signals and evidence/AED) influence the algorithmic prediction decision?
> 
> Any help is highly appreciated.
> With best wishes
> Jeanne Wilbrandt
> 
> 
> ~~~
> Jeanne Wilbrandt, M.sc.
> ORCID 0000-0002-0363-3837
> ~~~
> PhD candidate
> Leibniz PhD representative, student representative
> Leibniz Graduate School on Genomic Biodiversity Research
> ZFMK ~ zmb ~ University of Bonn
> 
> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




From qwzhang0601 at gmail.com  Thu Dec  7 15:44:03 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Thu, 7 Dec 2017 16:44:03 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
Message-ID: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>

Hello:

I am trying to identify pseudo genes following
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene

After I get the blast result, I am trying to scan pseudogenes by the
command "python pseudo_wrap.py parameter". But I got the following errors.
Do you have any ideas and suggestions about the errors? Thanks.

##below shows reported errors
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 4330, in <module>
    parse.get_qualified4(blast,fasta,E,I,L,P,Q)
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 3050, in get_qualified4
    N = sizes[L[0]]
KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
line 98, in <module>
    oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
IndexError: list index out of range
Done!

Best
Quanwei
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From xvazquezc at gmail.com  Thu Dec  7 17:34:54 2017
From: xvazquezc at gmail.com (=?UTF-8?Q?Xabier_V=C3=A1zquez=2DCampos?=)
Date: Fri, 8 Dec 2017 10:34:54 +1100
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
	<EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
Message-ID: <CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>

Using the --jaccard_clip option in Trinity, also helps to reduce the
merging of very close genes when assembling RNAseq. A must for fungi and
other gene-dense genomes.
It increases the assembly time of RNAseq quite a lot but it is worth it.

On 8 December 2017 at 03:28, Carson Holt <carsonhh at gmail.com> wrote:

> There is no gene density parameter, and for gene overlap there is no
> distance parameter. Gene overlap on the same strand is not permitted
> though. If a gene is being excluded because of UTR overlap, you can someone
> correct for that by setting correct_est_fusion=1. That will trim back the
> UTR on those cases since this type of exclusion is often caused by false
> merging of neighboring transcripts during mRNA-seq assembly. Some organisms
> like fungi do truly have UTR overlap observed some genes, but mRNA-seq
> reads will assemble into a single transcript, so it?s hard to tease apart.
> Trimming back the UTR in those cases tends to be the most reliable solution.
>
> ?Carson
>
>
> > On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de> wrote:
> >
> > Dear MAKER developers,
> >
> > I have wondered whether there is an internal threshold or cutoff value
> for gene density (allowing only x genes in a genomic region of a certain
> size) or gene overlap (requiring to be predictions x bases apart from each
> other)?
> >
> > We have come to this idea when re-annotating a genome with another gene
> predictor. Several cases of single-exon genes not predicted by MAKER but
> flanked (i.e. close proximity) by MAKER-predictions were observed.
> >
> > Thus, I'd like to ask: Which factors (apart from sequence/signals and
> evidence/AED) influence the algorithmic prediction decision?
> >
> > Any help is highly appreciated.
> > With best wishes
> > Jeanne Wilbrandt
> >
> >
> > ~~~
> > Jeanne Wilbrandt, M.sc.
> > ORCID 0000-0002-0363-3837
> > ~~~
> > PhD candidate
> > Leibniz PhD representative, student representative
> > Leibniz Graduate School on Genomic Biodiversity Research
> > ZFMK ~ zmb ~ University of Bonn
> >
> >
> >
> > _______________________________________________
> > maker-devel mailing list
> > maker-devel at box290.bluehost.com
> > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
Xabier V?zquez-Campos, *PhD*
*Research Associate*
NSW Systems Biology Initiative
School of Biotechnology and Biomolecular Sciences
The University of New South Wales
Sydney NSW 2052 AUSTRALIA
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From carsonhh at gmail.com  Thu Dec  7 22:42:29 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 21:42:29 -0700
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
Message-ID: <2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>

I?m going to CC Michael Campbell on this. I wasn?t really involved with any of the pseudogene accessory scripts and protocols that went with the MAKER-P publication nor have I really been involved with pseudogene annotation in general. So Michael might have more insight here.

?Carson

> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I am trying to identify pseudo genes following http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
> 
> After I get the blast result, I am trying to scan pseudogenes by the command "python pseudo_wrap.py parameter". But I got the following errors. Do you have any ideas and suggestions about the errors? Thanks.
> 
> ##below shows reported errors
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py", line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
> 
> Best
> Quanwei
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From qwzhang0601 at gmail.com  Fri Dec  8 07:46:05 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Fri, 8 Dec 2017 08:46:05 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
Message-ID: <CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>

Thank you Carson and Michael.

Best
Quanwei

2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:

> I?m going to CC Michael Campbell on this. I wasn?t really involved with
> any of the pseudogene accessory scripts and protocols that went with the
> MAKER-P publication nor have I really been involved with pseudogene
> annotation in general. So Michael might have more insight here.
>
> ?Carson
>
> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>
> Hello:
>
> I am trying to identify pseudo genes following
> http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>
> After I get the blast result, I am trying to scan pseudogenes by the
> command "python pseudo_wrap.py parameter". But I got the following errors.
> Do you have any ideas and suggestions about the errors? Thanks.
>
> ##below shows reported errors
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
> line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
>
> Best
> Quanwei
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>
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From jeanne.wilbrandt at web.de  Fri Dec  8 09:26:21 2017
From: jeanne.wilbrandt at web.de (Jeanne Web)
Date: Fri, 8 Dec 2017 16:26:21 +0100
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
	<EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
	<CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>
Message-ID: <60a78a42-d09d-09ce-93e2-1fad94119ea4@web.de>


Thank you very much for the clarifications, Carson and Xabier!



On 12/08/2017 12:34 AM, Xabier V?zquez-Campos wrote:
> Using the --jaccard_clip option in Trinity, also helps to reduce the 
> merging of very close genes when assembling RNAseq. A must for fungi and 
> other gene-dense genomes.
> It increases the assembly time of RNAseq quite a lot but it is worth it.
> 
> On 8 December 2017 at 03:28, Carson Holt <carsonhh at gmail.com 
> <mailto:carsonhh at gmail.com>> wrote:
> 
>     There is no gene density parameter, and for gene overlap there is no
>     distance parameter. Gene overlap on the same strand is not permitted
>     though. If a gene is being excluded because of UTR overlap, you can
>     someone correct for that by setting correct_est_fusion=1. That will
>     trim back the UTR on those cases since this type of exclusion is
>     often caused by false merging of neighboring transcripts during
>     mRNA-seq assembly. Some organisms like fungi do truly have UTR
>     overlap observed some genes, but mRNA-seq reads will assemble into a
>     single transcript, so it?s hard to tease apart. Trimming back the
>     UTR in those cases tends to be the most reliable solution.
> 
>     ?Carson
> 
> 
>      > On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de
>     <mailto:jeanne.wilbrandt at web.de>> wrote:
>      >
>      > Dear MAKER developers,
>      >
>      > I have wondered whether there is an internal threshold or cutoff
>     value for gene density (allowing only x genes in a genomic region of
>     a certain size) or gene overlap (requiring to be predictions x bases
>     apart from each other)?
>      >
>      > We have come to this idea when re-annotating a genome with
>     another gene predictor. Several cases of single-exon genes not
>     predicted by MAKER but flanked (i.e. close proximity) by
>     MAKER-predictions were observed.
>      >
>      > Thus, I'd like to ask: Which factors (apart from sequence/signals
>     and evidence/AED) influence the algorithmic prediction decision?
>      >
>      > Any help is highly appreciated.
>      > With best wishes
>      > Jeanne Wilbrandt
>      >
>      >
>      > ~~~
>      > Jeanne Wilbrandt, M.sc.
>      > ORCID 0000-0002-0363-3837
>      > ~~~
>      > PhD candidate
>      > Leibniz PhD representative, student representative
>      > Leibniz Graduate School on Genomic Biodiversity Research
>      > ZFMK ~ zmb ~ University of Bonn
>      >
>      >
>      >
>      > _______________________________________________
>      > maker-devel mailing list
>      > maker-devel at box290.bluehost.com
>     <mailto:maker-devel at box290.bluehost.com>
>      >
>     http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>     <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
> 
> 
>     _______________________________________________
>     maker-devel mailing list
>     maker-devel at box290.bluehost.com <mailto:maker-devel at box290.bluehost.com>
>     http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>     <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
> 
> 
> 
> 
> -- 
> Xabier V?zquez-Campos, /PhD/
> /Research Associate/
> NSW Systems Biology Initiative
> School of Biotechnology and Biomolecular Sciences
> The University of New South Wales
> Sydney NSW 2052 AUSTRALIA




From michael.s.campbell1 at gmail.com  Sun Dec 10 19:37:20 2017
From: michael.s.campbell1 at gmail.com (Michael Campbell)
Date: Sun, 10 Dec 2017 20:37:20 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
Message-ID: <13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>

Hi Quanwei,

My guess would be a file format issue, but the code has evolved since I worked with it. The last time that ran it the fasta header had to contain only the sequence ID without a space after it. That was the big gotcha that I remember.

I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.

Thanks,
Mike

> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Thank you Carson and Michael.
> 
> Best
> Quanwei
> 
> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:
>> I?m going to CC Michael Campbell on this. I wasn?t really involved with any of the pseudogene accessory scripts and protocols that went with the MAKER-P publication nor have I really been involved with pseudogene annotation in general. So Michael might have more insight here.
>> 
>> ?Carson
>> 
>>> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>> 
>>> Hello:
>>> 
>>> I am trying to identify pseudo genes following http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>> 
>>> After I get the blast result, I am trying to scan pseudogenes by the command "python pseudo_wrap.py parameter". But I got the following errors. Do you have any ideas and suggestions about the errors? Thanks.
>>> 
>>> ##below shows reported errors
>>> Traceback (most recent call last):
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 4330, in <module>
>>>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 3050, in get_qualified4
>>>     N = sizes[L[0]]
>>> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>> Traceback (most recent call last):
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py", line 98, in <module>
>>>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>> IndexError: list index out of range
>>> Done!
>>> 
>>> Best
>>> Quanwei
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
> 
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From qwzhang0601 at gmail.com  Mon Dec 11 08:55:42 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 09:55:42 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
Message-ID: <CAOW6FSL+2m-PB5tZQSHmBjbvbMm8QjsHpnNQYGGtd8w73uqw-A@mail.gmail.com>

Hello Shinhan and Michael:

Thanks for your help. The sequence is shown below, which is reported
protein sequence by Maker2. The error occur when I run "pseudo_wrap.py".
With the blast results and predicted protein sequences by Maker2, I am
trying to predict the pseudo genes in the whole assembly (both for those in
the intergenic regions and those among the predicted proteins).

>maker-Contig2656-snap-gene-1.9-mRNA-1 protein AED:0.04 eAED:0.04
QI:43|1|1|1|0.85|0.87|8|1768|297
MGTSLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGMSLTMEGTVNLQLSAKSVGVFE
AFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHVKGNKVLYETYHGVFVNIQYVL
RCDMRRSLLAKDLTKTCEFIVHSVPQKGKLTPSPVDFTITPETLQNVKERALLPKFLIRG
HLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNIQIADG
DVCRSLSVPIYMVFPRLFTCPTLETTNFKVEFEINVVVLLHADHLITENFPLKLCRT


#below is the blast results
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    51
0    0    220    270    424151    424303    3.23e-25    111
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    93.103    58    4
0    170    227    423367    423540    4.19e-24    108
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    85.000    60    7
1    66    123    404001    404180    5.67e-24    107
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    48
0    0    20    67    402613    402756    3.47e-20    96.7
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    50.725    69
25    1    238    297    426022    426228    6.48e-09    63.2
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    67.308    52
15    2    118    168    417125    417277    2.07e-08    61.6
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    25
0    0    145    169    419825    419899    5.54e-06    53.9
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    76.667    30    5
1    1    30    382922    383005    0.012    43.5
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig3808    22.545    275
175    9    15    283    112218    111490    1.13e-07    59.3
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2791    26.667    60
43    1    236    295    20108374    20108550    9.6    34.3


Many thanks

Best
Quanwei

2017-12-11 8:13 GMT-05:00 Shin-Han Shiu <shius at msu.edu>:

> Hi Mike and Carson, we will take over from here. Thanks for referring the
> message to us.
>
> Quanwei, it looks like for some reason your input sequence file is missing
> "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue with the
> sequence name since the code use space as delimiter in places. Can you
> check your sequence file for this sequence and let us know how the name
> after ">" look like?
>
> Nick, sorry for bugging you. Do you have any input on this?
>
> Shinhan
>
> On 12/10/2017 8:37 PM, Michael Campbell wrote:
>
> Hi Quanwei,
>
> My guess would be a file format issue, but the code has evolved since I
> worked with it. The last time that ran it the fasta header had to contain
> only the sequence ID without a space after it. That was the big gotcha that
> I remember.
>
> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>
> Thanks,
> Mike
>
> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>
> Thank you Carson and Michael.
>
> Best
> Quanwei
>
> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:
>
>> I?m going to CC Michael Campbell on this. I wasn?t really involved with
>> any of the pseudogene accessory scripts and protocols that went with the
>> MAKER-P publication nor have I really been involved with pseudogene
>> annotation in general. So Michael might have more insight here.
>>
>> ?Carson
>>
>> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>
>> Hello:
>>
>> I am trying to identify pseudo genes following
>> http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>
>> After I get the blast result, I am trying to scan pseudogenes by the
>> command "python pseudo_wrap.py parameter". But I got the following errors.
>> Do you have any ideas and suggestions about the errors? Thanks.
>>
>> ##below shows reported errors
>> Traceback (most recent call last):
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>> line 4330, in <module>
>>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>> line 3050, in get_qualified4
>>     N = sizes[L[0]]
>> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>> Traceback (most recent call last):
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>> line 98, in <module>
>>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>> IndexError: list index out of range
>> Done!
>>
>> Best
>> Quanwei
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>
>>
>>
>
> --
> --------------------------------------
> Shin-Han Shiu
> Michigan State University
> Department of Plant Biology
> 2265 Mol Plant Sci Bldg
> (TEL) +1-517-353-7196 <(517)%20353-7196>http://goo.gl/keiHZX <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMDaQ&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=2co1_3xFiHR-sHwprAR0Wh1nMeSutUJ7n-TAibVN28c&s=Mt70of3YH2ihTytQ-XPiKJS0rOpA_YAxJEuEyLFK1BQ&e=>
> --------------------------------------
>
>
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From qwzhang0601 at gmail.com  Mon Dec 11 09:18:02 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 10:18:02 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <20171211100137.89911puy7wxi9scx@mail.msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
	<20171211100137.89911puy7wxi9scx@mail.msu.edu>
Message-ID: <CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>

Thank you Nick. The output is shown below.

Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 4330, in <module>
    parse.get_qualified4(blast,fasta,E,I,L,P,Q)
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 3050, in get_qualified4
    N = sizes[L[0]]
KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
line 98, in <module>
    oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
IndexError: list index out of range
Done!

NOTE: DatabaseOp not imported
Program  : tfasty34
Pair list: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
Fasta1   : ../../prediction2_final.proteins.fasta
Fasta2   : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
Fasta dir: /gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin/
Working d:
Flags    : -A -m 3 -q
E thres  : 1.0
Read gene pairs...
 0 pairs
Read fasta files...
Do sw...
Done!
Read BLOSUM50 matrix...
Read the sw.out file...
Compare sequences:
 total: 0 alignments
Done!
Check parameter file...
 default: ml_t=30
 default: ev_t=5
 default: ml_p=0.05
 default: id_t=40
Filter ../maker2.blastn.m...
 E:5 I:40 L:30 P:0.05
Get pseudoexons...
 pseudoexon file: ../maker2.blastn.m_parsed_G500.PE
Get phase 1 pseudogene...
 phase1 ps file: ../maker2.blastn.m_parsed_G500.PE_I500.PS1
Get pair file and subject coordinates...
 pair file  : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
 coordinates: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord
Get phase 1 pseudogene sequences...
 phase 1 ps sequence:
../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
Find stop and framshifts...
 Smith-Waterman outputs:
../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.*
 Final output:
../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.out.disable_count

The pseudogene pipeline has finished!


Best
Quanwei

2017-12-11 10:01 GMT-05:00 <panchyni at msu.edu>:

> Quanwei, in addition to checking the sequence file, can you also send
> me the standard output of the run (this the text that normally prints
> to the terminal unless you pipe it somewhere else)? This would help
> in diagnosing the problem, but Shin-Han is likely correct that it is an
> issue in the name formatting.
>
> Nick
>
> Quoting Shin-Han Shiu <shius at msu.edu>:
>
> > Hi Mike and Carson, we will take over from here. Thanks for referring
> > the message to us.
> >
> > Quanwei, it looks like for some reason your input sequence file is
> > missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue
> > with the sequence name since the code use space as delimiter in
> > places. Can you check your sequence file for this sequence and let us
> > know how the name after ">" look like?
> >
> > Nick, sorry for bugging you. Do you have any input on this?
> >
> > Shinhan
> >
> >
> > On 12/10/2017 8:37 PM, Michael Campbell wrote:
> >> Hi Quanwei,
> >>
> >> My guess would be a file format issue, but the code has evolved
> >> since I worked with it. The last time that ran it the fasta header
> >> had to contain only the sequence ID without a space after it. That
> >> was the big gotcha that I remember.
> >>
> >> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his
> lab.
> >>
> >> Thanks,
> >> Mike
> >>
> >> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com
> >> <mailto:qwzhang0601 at gmail.com>> wrote:
> >>
> >>> Thank you Carson and Michael.
> >>>
> >>> Best
> >>> Quanwei
> >>>
> >>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com
> >>> <mailto:carsonhh at gmail.com>>:
> >>>
> >>>    I?m going to CC Michael Campbell on this. I wasn?t really
> >>>    involved with any of the pseudogene accessory scripts and
> >>>    protocols that went with the MAKER-P publication nor have I
> >>>    really been involved with pseudogene annotation in general. So
> >>>    Michael might have more insight here.
> >>>
> >>>    ?Carson
> >>>
> >>>>    On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
> >>>>    <mailto:qwzhang0601 at gmail.com>> wrote:
> >>>>
> >>>>    Hello:
> >>>>
> >>>>    I am trying to identify pseudo genes following
> >>>>    http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
> >>>>    <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
> >
> >>>>
> >>>>    After I get the blast result, I am trying to scan pseudogenes by
> >>>>    the command "python pseudo_wrap.py parameter". But I got the
> >>>>    following errors. Do you have any ideas and suggestions about
> >>>>    the errors? Thanks.
> >>>>
> >>>>    ##below shows reported errors
> >>>>    Traceback (most recent call last):
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
> ParseBlast.py",
> >>>>    line 4330, in <module>
> >>>>        parse.get_qualified4(blast,fasta,E,I,L,P,Q)
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
> ParseBlast.py",
> >>>>    line 3050, in get_qualified4
> >>>>        N = sizes[L[0]]
> >>>>    KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> >>>>    Traceback (most recent call last):
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/
> script_step3b.py",
> >>>>    line 98, in <module>
> >>>>        oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> >>>>    IndexError: list index out of range
> >>>>    Done!
> >>>>
> >>>>    Best
> >>>>    Quanwei
> >>>>    _______________________________________________
> >>>>    maker-devel mailing list
> >>>>    maker-devel at box290.bluehost.com
> >>>>    <mailto:maker-devel at box290.bluehost.com>
> >>>>    http://box290.bluehost.com/mailman/listinfo/maker-devel_
> yandell-lab.org
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=SeSN1OfBVQVhi5forovCTfSJGCO1bR7Q7LuCcWlhctI&e=>
> >>>>
> >>>> <https://urldefense.proofpoint.com/v2/url?u=http-
> 3A__box290.bluehost.com_mailman_listinfo_maker-
> 2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=
> rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=
> 2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
> >>>
> >>>
> >
> > --
> > --------------------------------------
> > Shin-Han Shiu
> > Michigan State University
> > Department of Plant Biology
> > 2265 Mol Plant Sci Bldg
> > (TEL) +1-517-353-7196 <(517)%20353-7196>
> > http://goo.gl/keiHZX
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=pk3W0L_Z0dlNJDAdwrb7dA0_NSdr21LVNthDV6V43qg&e=>
> > --------------------------------------
> >
> >
>
>
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From qwzhang0601 at gmail.com  Mon Dec 11 10:47:30 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 11:47:30 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
	<20171211100137.89911puy7wxi9scx@mail.msu.edu>
	<CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>
Message-ID: <CAOW6FS+dm9npUVLMPi6VTDvFH_ZncrvN9A=V9BWRW1nm+Xx+5g@mail.gmail.com>

Hi Nick:

Thank you Nick. It seems the error is really due to the sequence name. Now
"pseudo_wrap.py" is running after I change the names. But there are still
some things seem strange.

(1) I found in the file "log_step1", it shows below information at the top.
Does it matter?

NOTE: DatabaseOp not imported
NOTE: DatabaseOp not imported
...

(2) It also shows below information
Done!
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
....

While when I look into the folder
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin/", I found
there is no file "tfasty34". Instead, there is a file named "tfasty36".
fasta36  fastf36  fastm36  fasts36  fastx36  fasty36  ggsearch36
glsearch36  lalign36  map_db  README  ssearch36  tfastf36  tfastm36
tfasts36  tfastx36  tfasty36

Do you have any suggestions on this?

Best
Quanwei

2017-12-11 10:18 GMT-05:00 Quanwei Zhang <qwzhang0601 at gmail.com>:

> Thank you Nick. The output is shown below.
>
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
> line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
>
> NOTE: DatabaseOp not imported
> Program  : tfasty34
> Pair list: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
> Fasta1   : ../../prediction2_final.proteins.fasta
> Fasta2   : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
> Fasta dir: /gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.
> 8e/bin/
> Working d:
> Flags    : -A -m 3 -q
> E thres  : 1.0
> Read gene pairs...
>  0 pairs
> Read fasta files...
> Do sw...
> Done!
> Read BLOSUM50 matrix...
> Read the sw.out file...
> Compare sequences:
>  total: 0 alignments
> Done!
> Check parameter file...
>  default: ml_t=30
>  default: ev_t=5
>  default: ml_p=0.05
>  default: id_t=40
> Filter ../maker2.blastn.m...
>  E:5 I:40 L:30 P:0.05
> Get pseudoexons...
>  pseudoexon file: ../maker2.blastn.m_parsed_G500.PE
> Get phase 1 pseudogene...
>  phase1 ps file: ../maker2.blastn.m_parsed_G500.PE_I500.PS1
> Get pair file and subject coordinates...
>  pair file  : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
>  coordinates: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord
> Get phase 1 pseudogene sequences...
>  phase 1 ps sequence: ../maker2.blastn.m_parsed_
> G500.PE_I500.PS1.subj_coord.fa
> Find stop and framshifts...
>  Smith-Waterman outputs: ../maker2.blastn.m_parsed_
> G500.PE_I500.PS1_pairs.sw.*
>  Final output: ../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.out.
> disable_count
>
> The pseudogene pipeline has finished!
>
>
> Best
> Quanwei
>
> 2017-12-11 10:01 GMT-05:00 <panchyni at msu.edu>:
>
>> Quanwei, in addition to checking the sequence file, can you also send
>> me the standard output of the run (this the text that normally prints
>> to the terminal unless you pipe it somewhere else)? This would help
>> in diagnosing the problem, but Shin-Han is likely correct that it is an
>> issue in the name formatting.
>>
>> Nick
>>
>> Quoting Shin-Han Shiu <shius at msu.edu>:
>>
>> > Hi Mike and Carson, we will take over from here. Thanks for referring
>> > the message to us.
>> >
>> > Quanwei, it looks like for some reason your input sequence file is
>> > missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue
>> > with the sequence name since the code use space as delimiter in
>> > places. Can you check your sequence file for this sequence and let us
>> > know how the name after ">" look like?
>> >
>> > Nick, sorry for bugging you. Do you have any input on this?
>> >
>> > Shinhan
>> >
>> >
>> > On 12/10/2017 8:37 PM, Michael Campbell wrote:
>> >> Hi Quanwei,
>> >>
>> >> My guess would be a file format issue, but the code has evolved
>> >> since I worked with it. The last time that ran it the fasta header
>> >> had to contain only the sequence ID without a space after it. That
>> >> was the big gotcha that I remember.
>> >>
>> >> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his
>> lab.
>> >>
>> >> Thanks,
>> >> Mike
>> >>
>> >> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com
>> >> <mailto:qwzhang0601 at gmail.com>> wrote:
>> >>
>> >>> Thank you Carson and Michael.
>> >>>
>> >>> Best
>> >>> Quanwei
>> >>>
>> >>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com
>> >>> <mailto:carsonhh at gmail.com>>:
>> >>>
>> >>>    I?m going to CC Michael Campbell on this. I wasn?t really
>> >>>    involved with any of the pseudogene accessory scripts and
>> >>>    protocols that went with the MAKER-P publication nor have I
>> >>>    really been involved with pseudogene annotation in general. So
>> >>>    Michael might have more insight here.
>> >>>
>> >>>    ?Carson
>> >>>
>> >>>>    On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>> >>>>    <mailto:qwzhang0601 at gmail.com>> wrote:
>> >>>>
>> >>>>    Hello:
>> >>>>
>> >>>>    I am trying to identify pseudo genes following
>> >>>>    http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>> >>>>    <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseu
>> dogene>
>> >>>>
>> >>>>    After I get the blast result, I am trying to scan pseudogenes by
>> >>>>    the command "python pseudo_wrap.py parameter". But I got the
>> >>>>    following errors. Do you have any ideas and suggestions about
>> >>>>    the errors? Thanks.
>> >>>>
>> >>>>    ##below shows reported errors
>> >>>>    Traceback (most recent call last):
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
>> ParseBlast.py",
>> >>>>    line 4330, in <module>
>> >>>>        parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
>> ParseBlast.py",
>> >>>>    line 3050, in get_qualified4
>> >>>>        N = sizes[L[0]]
>> >>>>    KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>> >>>>    Traceback (most recent call last):
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/s
>> cript_step3b.py",
>> >>>>    line 98, in <module>
>> >>>>        oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>> >>>>    IndexError: list index out of range
>> >>>>    Done!
>> >>>>
>> >>>>    Best
>> >>>>    Quanwei
>> >>>>    _______________________________________________
>> >>>>    maker-devel mailing list
>> >>>>    maker-devel at box290.bluehost.com
>> >>>>    <mailto:maker-devel at box290.bluehost.com>
>> >>>>    http://box290.bluehost.com/mailman/listinfo/maker-devel_yand
>> ell-lab.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=SeSN1OfBVQVhi5forovCTfSJGCO1bR7Q7LuCcWlhctI&e=>
>> >>>>
>> >>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.
>> bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.
>> org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt
>> _w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT
>> 8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>> >>>
>> >>>
>> >
>> > --
>> > --------------------------------------
>> > Shin-Han Shiu
>> > Michigan State University
>> > Department of Plant Biology
>> > 2265 Mol Plant Sci Bldg
>> > (TEL) +1-517-353-7196 <(517)%20353-7196>
>> > http://goo.gl/keiHZX
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=pk3W0L_Z0dlNJDAdwrb7dA0_NSdr21LVNthDV6V43qg&e=>
>> > --------------------------------------
>> >
>> >
>>
>>
>
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From shius at msu.edu  Mon Dec 11 07:13:12 2017
From: shius at msu.edu (Shin-Han Shiu)
Date: Mon, 11 Dec 2017 08:13:12 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
Message-ID: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>

Hi Mike and Carson, we will take over from here. Thanks for referring 
the message to us.

Quanwei, it looks like for some reason your input sequence file is 
missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue 
with the sequence name since the code use space as delimiter in places. 
Can you check your sequence file for this sequence and let us know how 
the name after ">" look like?

Nick, sorry for bugging you. Do you have any input on this?

Shinhan


On 12/10/2017 8:37 PM, Michael Campbell wrote:
> Hi Quanwei,
>
> My guess would be a file format issue, but the code has evolved since 
> I worked with it. The last time that ran it the fasta header had to 
> contain only the sequence ID without a space after it. That was the 
> big gotcha that I remember.
>
> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>
> Thanks,
> Mike
>
> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com 
> <mailto:qwzhang0601 at gmail.com>> wrote:
>
>> Thank you Carson and Michael.
>>
>> Best
>> Quanwei
>>
>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com 
>> <mailto:carsonhh at gmail.com>>:
>>
>>     I?m going to CC Michael Campbell on this. I wasn?t really
>>     involved with any of the pseudogene accessory scripts and
>>     protocols that went with the MAKER-P publication nor have I
>>     really been involved with pseudogene annotation in general. So
>>     Michael might have more insight here.
>>
>>     ?Carson
>>
>>>     On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>>>     <mailto:qwzhang0601 at gmail.com>> wrote:
>>>
>>>     Hello:
>>>
>>>     I am trying to identify pseudo genes following
>>>     http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>>     <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
>>>
>>>     After I get the blast result, I am trying to scan pseudogenes by
>>>     the command "python pseudo_wrap.py parameter". But I got the
>>>     following errors. Do you have any ideas and suggestions about
>>>     the errors? Thanks.
>>>
>>>     ##below shows reported errors
>>>     Traceback (most recent call last):
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>     line 4330, in <module>
>>>     ??? parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>     line 3050, in get_qualified4
>>>     ??? N = sizes[L[0]]
>>>     KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>>     Traceback (most recent call last):
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>>>     line 98, in <module>
>>>     ??? oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>>     IndexError: list index out of range
>>>     Done!
>>>
>>>     Best
>>>     Quanwei
>>>     _______________________________________________
>>>     maker-devel mailing list
>>>     maker-devel at box290.bluehost.com
>>>     <mailto:maker-devel at box290.bluehost.com>
>>>     https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIDaQ&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=INRHprJZS3nvj3I7v7qRvlfE1rmWrIY_tWRnylEUFO0&s=wNeNO4xtaEKyLYvP4UJ-Y_ZtwUYAXtahXdEPgYOjFt4&e=
>>>     <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>
>>

-- 
--------------------------------------
Shin-Han Shiu
Michigan State University
Department of Plant Biology
2265 Mol Plant Sci Bldg
(TEL) +1-517-353-7196
https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwIDaQ&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=INRHprJZS3nvj3I7v7qRvlfE1rmWrIY_tWRnylEUFO0&s=vgKsVpK-Ie-YtMflGCeMoYOPLBVpWJP62soYw76Aqmo&e=
--------------------------------------

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From panchyni at msu.edu  Mon Dec 11 09:01:37 2017
From: panchyni at msu.edu (panchyni at msu.edu)
Date: Mon, 11 Dec 2017 10:01:37 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
Message-ID: <20171211100137.89911puy7wxi9scx@mail.msu.edu>

Quanwei, in addition to checking the sequence file, can you also send
me the standard output of the run (this the text that normally prints
to the terminal unless you pipe it somewhere else)? This would help
in diagnosing the problem, but Shin-Han is likely correct that it is an
issue in the name formatting.

Nick

Quoting Shin-Han Shiu <shius at msu.edu>:

> Hi Mike and Carson, we will take over from here. Thanks for referring 
> the message to us.
>
> Quanwei, it looks like for some reason your input sequence file is 
> missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue 
> with the sequence name since the code use space as delimiter in 
> places. Can you check your sequence file for this sequence and let us 
> know how the name after ">" look like?
>
> Nick, sorry for bugging you. Do you have any input on this?
>
> Shinhan
>
>
> On 12/10/2017 8:37 PM, Michael Campbell wrote:
>> Hi Quanwei,
>>
>> My guess would be a file format issue, but the code has evolved 
>> since I worked with it. The last time that ran it the fasta header 
>> had to contain only the sequence ID without a space after it. That 
>> was the big gotcha that I remember.
>>
>> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>>
>> Thanks,
>> Mike
>>
>> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com 
>> <mailto:qwzhang0601 at gmail.com>> wrote:
>>
>>> Thank you Carson and Michael.
>>>
>>> Best
>>> Quanwei
>>>
>>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com 
>>> <mailto:carsonhh at gmail.com>>:
>>>
>>>? ? I?m going to CC Michael Campbell on this. I wasn?t really
>>>? ? involved with any of the pseudogene accessory scripts and
>>>? ? protocols that went with the MAKER-P publication nor have I
>>>? ? really been involved with pseudogene annotation in general. So
>>>? ? Michael might have more insight here.
>>>
>>>? ? ?Carson
>>>
>>>>? ? On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>>>>? ? <mailto:qwzhang0601 at gmail.com>> wrote:
>>>>
>>>>? ? Hello:
>>>>
>>>>? ? I am trying to identify pseudo genes following
>>>>? ? http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>>>? ? <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
>>>>
>>>>? ? After I get the blast result, I am trying to scan pseudogenes by
>>>>? ? the command "python pseudo_wrap.py parameter". But I got the
>>>>? ? following errors. Do you have any ideas and suggestions about
>>>>? ? the errors? Thanks.
>>>>
>>>>? ? ##below shows reported errors
>>>>? ? Traceback (most recent call last):
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>>? ? line 4330, in <module>
>>>>? ? ??? parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>>? ? line 3050, in get_qualified4
>>>>? ? ??? N = sizes[L[0]]
>>>>? ? KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>>>? ? Traceback (most recent call last):
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>>>>? ? line 98, in <module>
>>>>? ? ??? oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>>>? ? IndexError: list index out of range
>>>>? ? Done!
>>>>
>>>>? ? Best
>>>>? ? Quanwei
>>>>? ? _______________________________________________
>>>>? ? maker-devel mailing list
>>>>? ? maker-devel at box290.bluehost.com
>>>>? ? <mailto:maker-devel at box290.bluehost.com>
>>>>? ? https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIFAw&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=O8wVZED5PZBb8ShEI3XsYeVWU8owwPT37_nVEoRY6ak&s=mH6XtbLd3JEy6xKyCX_76sXdhbyq_e0CczfOpQvrqEk&e=
>>>>? ? 
>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>>
>>>
>
> -- 
> --------------------------------------
> Shin-Han Shiu
> Michigan State University
> Department of Plant Biology
> 2265 Mol Plant Sci Bldg
> (TEL) +1-517-353-7196
> https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwIFAw&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=O8wVZED5PZBb8ShEI3XsYeVWU8owwPT37_nVEoRY6ak&s=_zXpOrewnF9jjZxW98cCBUElJjHBanS6XxkTcOCwvdI&e=
> --------------------------------------
>
>
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From jacques.dainat at bils.se  Sat Dec  2 04:53:22 2017
From: jacques.dainat at bils.se (Jacques Dainat)
Date: Sat, 2 Dec 2017 11:53:22 +0100
Subject: [maker-devel] substr outside of string in PhatHits_utils.pm
In-Reply-To: <182CDDD3-A108-4095-9AC4-A2C198D34107@ibv.uio.no>
References: <B3C7D2DB-8716-4C9F-BF3A-BB9E82057BBB@ibv.uio.no>
	<5E5CA836-91B1-4AA8-8DC3-68FB9885EB43@gmail.com>
	<182CDDD3-A108-4095-9AC4-A2C198D34107@ibv.uio.no>
Message-ID: <381F5EAB-2C0B-4DED-BD32-573D1B1C2B47@bils.se>

Dear Carson,

I got exactly the same problem as Ole Kristian Torresen.
substr outside of string at /projects/cees/bin/maker/maker-3.01.1/bin/../lib/PhatHit_utils.pm line 850.
I also tried with the version 3.00.0 and got the same problem.

My run:
I was using gff3 alignements as gff ESTs, proteins and activating repeat masking and trna.

The code line in PhatHit_utils.pm is the following:
      my $transcript_seq  = maker::auto_annotator::get_transcript_seq($hit, $seq); # few line before
      ?..
 	#fix stop codon by walking downstream 
 	my $has_stop = $tM->is_ter_codon(substr($transcript_seq, $end-1-3, 3));   # <= line 850

So, I relaunched using the ?debug option but didn?t find anything useful.

Consequently I modified the  code to display the $transcript_seq object.
I joined the log were you can see the printed object from line 10955. 
I also printed the size of the sequence (length($transcript_seq)) and $end.
We can see that it crashes because the sequence is 1369 bp long and we try to extract a stop codon from position 1372 (1376-1-3). 


Printing the object I saw that the bug looks to occur when handling the protein evidence Q8J0D9.1.
I checked if relaunching Maker using only this protein. But everything went fine.
Could it be the EST evidence that interfers how MAKER is handling the Q8J0D9.1 protein evidence ?

I hope you could help us.

Best regards,


Jacques Dainat, PhD
NBIS (National Bioinformatics Infrastructure Sweden)
Genome Annotation Service

Address:
Uppsala University, Biomedicinska Centrum
Department of Medical Biochemistry Microbiology, Genomics
Husargatan 3, box 582
S-75123 Uppsala Sweden
Phone: +46 18 471 46 25

> On 21 Nov 2017, at 14:57, Ole Kristian T?rresen <o.k.torresen at ibv.uio.no> wrote:
> 
> Thank you Carson.
> 
> After a bit of struggling, I can confirm that the same error occurs in MAKER 3.01.2 (I guess you meant that version, couldn?t find 3.02.02).
> 
> I am providing a GFF to est_gff, with match and match_part entries. For at least one of the scaffolds, the last coordinate (column 5) is the same number as the length of the scaffold. That should be allowed by the GFF3 standard, right?
> 
> How can I troubleshoot this? The error message is not so informative. It seems that PhatHit_utils.pm tries to find a stop codon. Snipped from that file, lines 849-850:
> #fix stop codon by walking downstream
> my $has_stop = $tM->is_ter_codon(substr($transcript_seq, $end-1-3, 3));
> 
> The GFF I am using was the output of Mikado (https://www.biorxiv.org/content/early/2017/11/09/216994), which is GFF3, and then processed a bit to make it suitable for MAKER. First converted to GTF by 'mikado util convert mikado.loci.gff3 mikado.loci.gtf'
> 
> Then I selected only mRNA and exon entries, and changed mRNA to transcript to make it look like cufflinks output (and set a dummy score):
> grep -P "\tmRNA\t|\texon\t" mikado.loci.gtf |sed "s/mRNA/transcript/g" |awk -F "\t" '{$9=$9"cov \"10.0\";"; OFS="\t"; print $1, $2, $3, $4, $5, $6, $7, $8, $9}' > mikado.loci.score.gtf
> 
> Before converting with cufflinks2gff3:
> cufflinks2gff3 mikado.loci.score.gtf > ests.score.gff3
> 
> Thank you.
> 
> Ole
> 
> 
>> On 09 Nov 2017, at 17:28, Carson Holt <carsonhh at gmail.com> wrote:
>> 
>> My first guess is that if you are using gff3 files as input to anything, then there may be an  issue with your GFF3 file. My second suggestion is to try MAKER 3.02.02 to see if it has the same issue.
>> 
>> ?Carson
>> 
>> 
>>> On Nov 9, 2017, at 2:44 AM, Ole Kristian T?rresen <o.k.torresen at ibv.uio.no> wrote:
>>> 
>>> Dear all,
>>> I'm having an issue with MAKER which I'm unable to wrap my head around. Hopefully the issue is easily identifiable and resolvable for someone with more insight than me. Please find the log output attached below. I cannot find any more information than this in any logs. Many scaffolds do complete fine, but some of the longest ones have issues.
>>> 
>>> Thank you.
>>> 
>>> Sincerely,
>>> Ole K. T?rresen
>>> 
>>> Error message:
>>> 
>>> #--------- command -------------#
>>> Widget::augustus:
>>> /projects/cees/bin/augustus/augustus-3.2.3/bin/augustus  --strand=backward --species=gadMor2_code_braker2 --UTR=off --hintsfile=/tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_brak
>>> er2.auto_annotator.xdef.augustus --extrinsicCfgFile=/projects/cees/bin/augustus/augustus-3.2.3/config/extrinsic/extrinsic.MPE.cfg --AUGUSTUS_CONFIG_PATH=/projects/cees/bin/augustus/augustus-3.2
>>> .3/config /tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_braker2.auto_annotator.augustus.fasta > /tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_braker2.auto_annotato
>>> r.augustus
>>> #-------------------------------#
>>> deleted:0 genes
>>> begin called get_best_alt_splices1
>>> ...processing 0 of 2
>>> ...processing 1 of 2
>>> end called get_best_alt_splices1
>>> ...processing 0 of 20
>>> ...processing 1 of 20
>>> ...processing 2 of 20
>>> ...processing 3 of 20
>>> ...processing 4 of 20
>>> ...processing 5 of 20
>>> ...processing 6 of 20
>>> ...processing 7 of 20
>>> ...processing 8 of 20
>>> ...processing 9 of 20
>>> ...processing 10 of 20
>>> ...processing 11 of 20
>>> ...processing 12 of 20
>>> ...processing 13 of 20
>>> ...processing 14 of 20
>>> ...processing 15 of 20
>>> ...processing 16 of 20
>>> ...processing 17 of 20
>>> ...processing 18 of 20
>>> ...processing 19 of 20
>>> substr outside of string at /projects/cees/bin/maker/maker-3.1.1/bin/../lib/PhatHit_utils.pm line 850.
>>> --> rank=NA, hostname=compute-31-18.local
>>> ERROR: Failed while annotating transcripts
>>> ERROR: Chunk failed at level:1, tier_type:4
>>> FAILED CONTIG:GmG20150304_scaffold_8692
>>> 
>>> ERROR: Chunk failed at level:6, tier_type:0
>>> FAILED CONTIG:GmG20150304_scaffold_8692
>>> 
>>> examining contents of the fasta file and run log
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From chenjunhui at bgi.com  Wed Dec 13 03:56:46 2017
From: chenjunhui at bgi.com (=?gb2312?B?s8K+/LvUKEp1bmh1aSBDaGVuKQ==?=)
Date: Wed, 13 Dec 2017 09:56:46 +0000
Subject: [maker-devel] =?gb2312?b?UHJvYmxlbSBvZiBtYWtlcqO/?=
Message-ID: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>

Dear Dr?
Gooddays for you.

Recently, we used maker software to annotate our genome. However, we found that some annoted genes utr region was out of the scaffold as following:
sc0000223       maker   five_prime_UTR  101136  101159
sc0000223      0      101142

Would you like to give us some suggetions and help about this problem?
Many thanks for your help and suggestions

Look forward from you.


Best regards
Yours, hui

??? ???????
??????????
???????????????21??????7??518083
?????0755-36307095
??: chenjunhui at genomics.cn<mailto:chenjunhui at genomics.cn>

[??: ??: ??: ??: ??: ??: ??: ??: ??: cid:image003.jpg at 01D20520.996633B0]
________________________________
????
?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

















































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From carsonhh at gmail.com  Thu Dec 14 10:48:57 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 14 Dec 2017 09:48:57 -0700
Subject: [maker-devel] =?utf-8?q?Problem_of_maker=EF=BC=9F?=
In-Reply-To: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>
References: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>
Message-ID: <B653630D-87AB-46CF-8865-BA68CA3478D8@gmail.com>

Hi Hui,

1. Make sure you are not using a very old version of MAKER. Current stable version is 2.31.9
2. If you are using GFF3 input as part of your run, then the issue may be in the input GFF3 file (MAKER gets the coordinates from the file you give it).
3. Delete and rerun the contig in question. The lines you gave in your example are missing columns, which may have just been a cut and paste mistake, but if not, then it?s an IO error - failure to print full line - which just needs to be rerun (can sometimes happen with slow NFS file systems).
4. Make sure you have current version of BioPerl (current CPAN version and not BioPerl-live).


The only previous occurrence of a start position issue with MAKER ( https://groups.google.com/forum/#!searchin/maker-devel/start$20position%7Csort:date/maker-devel/Yzn6XTm2aas/J2IOGyWXbVMJ ) involved the use of a very old MAKER installation together with bad installation of some prerequisites.


Thanks,
Carson



> On Dec 13, 2017, at 2:56 AM, ???(Junhui Chen) <chenjunhui at bgi.com> wrote:
> 
> Dear Dr?
> Gooddays for you.
>  
> Recently, we used maker software to annotate our genome. However, we found that some annoted genes utr region was out of the scaffold as following:
> sc0000223       maker   five_prime_UTR  101136  101159
> sc0000223      0      101142
>  
> Would you like to give us some suggetions and help about this problem?
> Many thanks for your help and suggestions
>  
> Look forward from you.
>  
>  
> Best regards
> Yours, hui
>  
> ??? ???????
> ?????????? 
> ???????????????21??????7??518083
> ?????0755-36307095
> ??: chenjunhui at genomics.cn <mailto:chenjunhui at genomics.cn>
>  
> <image001.jpg>
> ????
> ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
>  
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>  
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>  
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>  
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>  
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com <mailto:maker-devel at box290.bluehost.com>
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
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From qwzhang0601 at gmail.com  Thu Dec 21 09:06:50 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Thu, 21 Dec 2017 10:06:50 -0500
Subject: [maker-devel] how the maker2 pipeline deal with a Ns sequence
Message-ID: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>

Hello:

I wonder how the maker2 pipeline deals with a 1kb or 100bp NN sequences in
a scafold, especially when such sequences within a gene region?

Recently, we improved a rodent genome. However, at a few certain regions we
filled the gap with both sequences and Ns sequences. We found some
predicted genes in the old assembly lost in our new assembly. By looking
deep into the region, the gene region in the new assembly highly match the
old assembly at both ends of the gene, where covered most predicted coding
sequences (predicted in the old assembly). The only difference is shown in
the middle of the gene with some new sequence and Ns sequences. Attached in
the alignments between sequence in the old and new assembly in the gene
region (Y coordinate shows the new assembly).

Many thanks and Merry Christmas

Best
Quanwei
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From carsonhh at gmail.com  Thu Dec 21 10:49:23 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 21 Dec 2017 09:49:23 -0700
Subject: [maker-devel] how the maker2 pipeline deal with a Ns sequence
In-Reply-To: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>
References: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>
Message-ID: <8A736E44-5D13-408D-A60D-9F843C6D9104@gmail.com>

MAKER doesn?t do anything special for stretches of N?s. They still will be run through each step, just producing empty results in most cases for the region. Programs MAKER uses like BLAST will not align to N?s, so any alignment must either happen around the N?s for short stretches or no result is produced for long stretches (results will be produced in regions where the N?s stop). Also gene predictors will not include N?s in their models, so the N?s will either occur within the intron, or will be skipped over entirely.

?Carson


> On Dec 21, 2017, at 8:06 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I wonder how the maker2 pipeline deals with a 1kb or 100bp NN sequences in a scafold, especially when such sequences within a gene region?
> 
> Recently, we improved a rodent genome. However, at a few certain regions we filled the gap with both sequences and Ns sequences. We found some predicted genes in the old assembly lost in our new assembly. By looking deep into the region, the gene region in the new assembly highly match the old assembly at both ends of the gene, where covered most predicted coding sequences (predicted in the old assembly). The only difference is shown in the middle of the gene with some new sequence and Ns sequences. Attached in the alignments between sequence in the old and new assembly in the gene region (Y coordinate shows the new assembly).
> 
> Many thanks and Merry Christmas
> 
> Best
> Quanwei   
> <hit_matrix.png>_______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




From carsonhh at gmail.com  Fri Dec  1 08:46:30 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 1 Dec 2017 08:46:30 -0700
Subject: [maker-devel] Changing the genetic code table in MAKER
In-Reply-To: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>
References: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>
Message-ID: <C2D92775-EEDA-48A6-920F-5A8E1A2FCF3A@gmail.com>

Sorry. MAKER does not currently support alternate codon tables.

?Carson


> On Nov 30, 2017, at 11:20 PM, Yu-Hsuan Cheng <aircoolsky at gmail.com> wrote:
> 
> Hi,
> 
> This is YuHsuan Cheng, who is a PhD student from Taiwan. I want to use the MAKER combining with SNAP to annotate ciliates genome. The genetic code for ciliates is different from other species, so I am wondering that if there is any option in MAKER I can change the genetic code table? I also asked Dr. Korf about this issue, he said SNAP has no way to change the genetic code table. I will use Augustus combining with Maker later on. 
> The pipeline I used previously is as followed.
> 
> 1. MAKER (Hints from proteome and RNAseq)
> 2. MAKER to Zff  
> 3. ~/bin/maker/exe/snap/hmm-assembler.pl <http://hmm-assembler.pl/> snapFirst . > ../../snapFirst.hmm
> and then used snapFirst.hmm as hints in MAKER
> 
> Look forward to your reply. Thank you.
> 
> Best wishes,
> 
> YuHsuan 
> 
> Yu-Hsuan Cheng ???
> Institute of Molecular Biology
> Academia Sinica
> 128 Academia road, Section 2
> Nankang, Taipei 115
> Taiwan
> Phone:+886-2-2789-9216 <tel:+886%202%202789%209216> (Lab), +886-958-216-538 <tel:+886%20958%20216%20538> (Mobile phone)
> d02b48008 at ntu.edu.tw <mailto:d02b48008 at ntu.edu.tw>_______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From qwzhang0601 at gmail.com  Fri Dec  1 09:56:27 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Fri, 1 Dec 2017 11:56:27 -0500
Subject: [maker-devel] Pseudogene identification
In-Reply-To: <CAOW6FSJ=Bkqezoy1uAt68Gixfmzxy+NVCq=nf_j0ouDfoSpYog@mail.gmail.com>
References: <CAOW6FSKHVYLK1sn5-YUqVk_ucn3iRUqtjkVoAvpQT==NmK8srw@mail.gmail.com>
	<B1CC1942-5D84-48BE-A4B7-2F9B465B9E2C@gmail.com>
	<CAOW6FSJ=Bkqezoy1uAt68Gixfmzxy+NVCq=nf_j0ouDfoSpYog@mail.gmail.com>
Message-ID: <CAOW6FSL9XY8aRiJZTDVaWwO6qTBiVswmnRJ3r7c=cgqYRaskgA@mail.gmail.com>

Dear Carson:

Thanks again for all your previous help. I am still trying to identify
pseudo genes. For me, I have two goals to identify pseudo genes.
(1) Check which predicted protein coding genes are in fact pseudo genes
(especially I want to check genes belong to gene families, which are found
under expansion in our analyzed geome).
(2) Identify pseudo genes in the intergentic regions.
But the link "
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene" only
describe Identification of pseudo genes in the intergentic regions. I
wonder whether I can simple follow the pipeline and run it on the whole
genome, so I can achieve my two goals above. Or do I need to do some
adjustment of the pipeline?

At beginning, I though the pipeline is only useful to identify pseudo genes
in the intergentic regions, but in the following paper, they mentioned the
pipeline was applied to the whole genome. So I think maybe I can also do
this, but not sure whether I can simply run the same pipeline in the
following link on whole genome ("
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene").

In the paper "MAKER-P: A Tool Kit for the Rapid Creation,Management, and
Quality Control of Plant Genome Annotations". It saids "If the analysis
pipeline is applied to the whole genome, 2.5% and 0.6% of currently
annotated proteincoding genes are identified as pseudogenes due to the
presence of misidentified stops and frame shifts, respectively, indicating
that the false-positive rate of our pipeline is 3.1%."

Many thanks for your help.

Best
Quanwei


2017-08-01 9:32 GMT-04:00 Quanwei Zhang <qwzhang0601 at gmail.com>:

> Hi Carson:
>
> I took a look at the description about the pipe line of pseudogene
> identification. In my understanding it will use the annotated (predicted by
> Maker2) protein coding genes as input (i.e., query sequences), search in
> the intergenic spaces (so annotated genes will not be checked) and find the
> regions where show certain level of similarity to the annotated genes.
>
> If my understanding is correct, I think it is not what I want to do get.
> Based on the annotated coding genes from Maker2, we found some genes are
> under expansion in the new species. We want to check and make sure all the
> gene copies in the expanded gene family really function (to make sure they
> are not pseudogenes).
>
> Do you think the pseudogene identification pipe line of Maker2 can be
> helpful for my goal? Or do you have any suggestions on this?
>
> Many thanks
>
> Best
> Quanwei
>
> 2017-07-31 19:54 GMT-04:00 Carson Holt <carsonhh at gmail.com>:
>
>> The MAKER-P fork was merged back into standard MAKER with version 2.29
>> (roughly 3 years ago - a separate download no longer exists). This is
>> because MAKER-P?s functionality is almost entirely in accessory scripts and
>> written protocols. The ?/maker/bin/maker called by both MAKER2 and MAKER-P
>> is actually the same script. So no need to rerun, because if you are using
>> version 2.29 or later, you already ran it.
>>
>> Pseudogene calling is therefore handled by accessory scripts and
>> protocols you can find here ?> http://shiulab.plantbiology
>> .msu.edu/wiki/index.php/Protocol:Pseudogene
>>
>> The other MAKER-P protocols can be found here ?>
>> http://www.yandell-lab.org/software/maker-p.html
>>
>> --Carson
>>
>>
>>
>> On Jul 31, 2017, at 5:02 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>
>> Hello:
>>
>> We used Maker2 to annotate a new rodent genome. By using the annotated
>> genes we did gene family expansion analysis, and found several gene
>> families under expansion in the new rodent genome. But we want to check
>> whether some annotated genes are Pseudogenes, which lead to the expansion.
>> Do you have any suggestions on this?
>>
>> We found the Maker-P can annotate Pseudogene, but we are not sure whether
>> it is worth to repeat our annotation with Maker-P. Besides, we are not sure
>> whether the default parameters of Maker-P are good for a rodent species.
>> What's more, in my understanding the Maker-P will identify Pseudogenes in
>> the intergenic spaces (which I think the annotated coding genes will be not
>> be tested and checked).
>>
>> Do you have any suggestions to solve our problem? We do not want to
>> identify Pseudogene on the genome wide, but only want to check those genes
>> showing expansion (to make sure all those gene copies really function).
>>
>> Many thanks
>>
>> Best
>> Quanwei
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>>
>
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From patrick.tranvan at unil.ch  Fri Dec  1 13:27:09 2017
From: patrick.tranvan at unil.ch (Patrick Tran Van)
Date: Fri, 1 Dec 2017 20:27:09 +0000
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
Message-ID: <1512160093637.44052@unil.ch>

Hi,


>From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).


So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?

Because I have way more gene with keep_pred=1.


Maybe I missed something.


Thanks.


Patrick
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From carsonhh at gmail.com  Fri Dec  1 14:11:51 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 1 Dec 2017 14:11:51 -0700
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <1512160093637.44052@unil.ch>
References: <1512160093637.44052@unil.ch>
Message-ID: <CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>

keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what?s left to the final gene models. It?s basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.

?Carson


> On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch> wrote:
> 
> Hi,
> 
> From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).
> 
> So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
> Because I have way more gene with keep_pred=1. 
> 
> Maybe I missed something.
> 
> Thanks.
> 
> Patrick 

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From patrick.tranvan at unil.ch  Sun Dec  3 03:08:21 2017
From: patrick.tranvan at unil.ch (Patrick Tran Van)
Date: Sun, 3 Dec 2017 10:08:21 +0000
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
References: <1512160093637.44052@unil.ch>,
	<CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
Message-ID: <1512295765377.75322@unil.ch>

Ok for keep_preds but AED=1 means no support at all or (very) bad support ?


Patrick Tran Van

Groups Chapuisat, Robinson-Rechavi & Schwander
Department of Ecology and Evolution
University of Lausanne
Le Biophore
CH-1015 Lausanne
Switzerland
Office 3206
________________________________
From: Carson Holt <carsonhh at gmail.com>
Sent: Friday, December 1, 2017 10:11 PM
To: Patrick Tran Van
Cc: maker-devel at yandell-lab.org
Subject: Re: Difference between AED=1 and keep_preds=1

keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what's left to the final gene models. It's basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.

-Carson


On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch<mailto:patrick.tranvan at unil.ch>> wrote:

Hi,

>From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).

So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
Because I have way more gene with keep_pred=1.

Maybe I missed something.

Thanks.

Patrick

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From carsonhh at gmail.com  Sun Dec  3 14:09:22 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 3 Dec 2017 14:09:22 -0700
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <1512295765377.75322@unil.ch>
References: <1512160093637.44052@unil.ch>
	<CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
	<1512295765377.75322@unil.ch>
Message-ID: <57EE5EF4-E7B1-4DF3-B4CA-B12531AD93A1@gmail.com>

It means no support at all.

?Carson



> On Dec 3, 2017, at 3:08 AM, Patrick Tran Van <patrick.tranvan at unil.ch> wrote:
> 
> Ok for keep_preds but AED=1 means no support at all or (very) bad support ?
> 
> Patrick Tran Van
> 
> Groups Chapuisat, Robinson-Rechavi & Schwander
> Department of Ecology and Evolution
> University of Lausanne
> Le Biophore
> CH-1015 Lausanne
> Switzerland
> Office 3206
> From: Carson Holt <carsonhh at gmail.com <mailto:carsonhh at gmail.com>>
> Sent: Friday, December 1, 2017 10:11 PM
> To: Patrick Tran Van
> Cc: maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>
> Subject: Re: Difference between AED=1 and keep_preds=1
>  
> keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what?s left to the final gene models. It?s basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.
> 
> ?Carson
> 
> 
>> On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch <mailto:patrick.tranvan at unil.ch>> wrote:
>> 
>> Hi,
>> 
>> From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).
>> 
>> So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
>> Because I have way more gene with keep_pred=1. 
>> 
>> Maybe I missed something.
>> 
>> Thanks.
>> 
>> Patrick 
> 
> 

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From scott at scottcain.net  Thu Dec  7 08:53:16 2017
From: scott at scottcain.net (Scott Cain)
Date: Thu, 7 Dec 2017 10:53:16 -0500
Subject: [maker-devel] MAKER run error
In-Reply-To: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
References: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
Message-ID: <CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>

Hi Guinara,

I don't know (though my guess would be that you're running out of memory).
I'm cc'ing the MAKER developer's mailing list to see if anybody on that
list knows.

Scott


On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <tagirdzh at ualberta.ca>
wrote:

> Hello,
>
> I got this error running maker on mac:
>
> STATUS: Parsing control files...
> STATUS: Processing and indexing input FASTA files...
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> Filesize limit exceeded: 25
>
> Is there anything that could solve it?
>
> Thank you,
> Gulnara
>
>
>


-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research
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From carsonhh at gmail.com  Thu Dec  7 09:00:29 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 09:00:29 -0700
Subject: [maker-devel] MAKER run error
In-Reply-To: <CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>
References: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
	<CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>
Message-ID: <7DAB19A4-573C-4E9E-A208-7352228A502B@gmail.com>

The FASTA file gets indexed by BioPerl using BerkleyDB. I?m guessing there is something odd about your input file and the database has run out of HASHes for indexing. You can google if there is a setting you can configure in BerkleyDB on Mac. But I suspect you are doing something like giving the raw reads from an mRNA-seq experiment or DNA sequencing to MAKER (resulting in billions of entrires to be indexed), which would be incorrect. MAKER can?t handle raw data. You must first assemble it using using like Trinity for example for mRNA.

Thanks,
Carson

> On Dec 7, 2017, at 8:53 AM, Scott Cain <scott at scottcain.net> wrote:
> 
> Hi Guinara,
> 
> I don't know (though my guess would be that you're running out of memory).  I'm cc'ing the MAKER developer's mailing list to see if anybody on that list knows.
> 
> Scott
> 
> 
> On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <tagirdzh at ualberta.ca <mailto:tagirdzh at ualberta.ca>> wrote:
> Hello,
> 
> I got this error running maker on mac:
> 
> STATUS: Parsing control files...
> STATUS: Processing and indexing input FASTA files...
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> Filesize limit exceeded: 25
> 
> Is there anything that could solve it?
> 
> Thank you,
> Gulnara
> 
> 
> 
> 
> 
> -- 
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/ <http://gmod.org/>)                     216-392-3087
> Ontario Institute for Cancer Research
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From jeanne.wilbrandt at web.de  Thu Dec  7 09:13:05 2017
From: jeanne.wilbrandt at web.de (Jeanne Web)
Date: Thu, 7 Dec 2017 17:13:05 +0100
Subject: [maker-devel] [Maker] Gene density threshold?
Message-ID: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>

Dear MAKER developers,

I have wondered whether there is an internal threshold or cutoff value 
for gene density (allowing only x genes in a genomic region of a certain 
size) or gene overlap (requiring to be predictions x bases apart from 
each other)?

We have come to this idea when re-annotating a genome with another gene 
predictor. Several cases of single-exon genes not predicted by MAKER but 
flanked (i.e. close proximity) by MAKER-predictions were observed.

Thus, I'd like to ask: Which factors (apart from sequence/signals and 
evidence/AED) influence the algorithmic prediction decision?

Any help is highly appreciated.
With best wishes
Jeanne Wilbrandt


~~~
Jeanne Wilbrandt, M.sc.
ORCID 0000-0002-0363-3837
~~~
PhD candidate
Leibniz PhD representative, student representative
Leibniz Graduate School on Genomic Biodiversity Research
ZFMK ~ zmb ~ University of Bonn





From carsonhh at gmail.com  Thu Dec  7 09:28:01 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 09:28:01 -0700
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
Message-ID: <EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>

There is no gene density parameter, and for gene overlap there is no distance parameter. Gene overlap on the same strand is not permitted though. If a gene is being excluded because of UTR overlap, you can someone correct for that by setting correct_est_fusion=1. That will trim back the UTR on those cases since this type of exclusion is often caused by false merging of neighboring transcripts during mRNA-seq assembly. Some organisms like fungi do truly have UTR overlap observed some genes, but mRNA-seq reads will assemble into a single transcript, so it?s hard to tease apart. Trimming back the UTR in those cases tends to be the most reliable solution.

?Carson


> On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de> wrote:
> 
> Dear MAKER developers,
> 
> I have wondered whether there is an internal threshold or cutoff value for gene density (allowing only x genes in a genomic region of a certain size) or gene overlap (requiring to be predictions x bases apart from each other)?
> 
> We have come to this idea when re-annotating a genome with another gene predictor. Several cases of single-exon genes not predicted by MAKER but flanked (i.e. close proximity) by MAKER-predictions were observed.
> 
> Thus, I'd like to ask: Which factors (apart from sequence/signals and evidence/AED) influence the algorithmic prediction decision?
> 
> Any help is highly appreciated.
> With best wishes
> Jeanne Wilbrandt
> 
> 
> ~~~
> Jeanne Wilbrandt, M.sc.
> ORCID 0000-0002-0363-3837
> ~~~
> PhD candidate
> Leibniz PhD representative, student representative
> Leibniz Graduate School on Genomic Biodiversity Research
> ZFMK ~ zmb ~ University of Bonn
> 
> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




From qwzhang0601 at gmail.com  Thu Dec  7 14:44:03 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Thu, 7 Dec 2017 16:44:03 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
Message-ID: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>

Hello:

I am trying to identify pseudo genes following
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene

After I get the blast result, I am trying to scan pseudogenes by the
command "python pseudo_wrap.py parameter". But I got the following errors.
Do you have any ideas and suggestions about the errors? Thanks.

##below shows reported errors
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 4330, in <module>
    parse.get_qualified4(blast,fasta,E,I,L,P,Q)
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 3050, in get_qualified4
    N = sizes[L[0]]
KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
line 98, in <module>
    oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
IndexError: list index out of range
Done!

Best
Quanwei
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From xvazquezc at gmail.com  Thu Dec  7 16:34:54 2017
From: xvazquezc at gmail.com (=?UTF-8?Q?Xabier_V=C3=A1zquez=2DCampos?=)
Date: Fri, 8 Dec 2017 10:34:54 +1100
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
	<EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
Message-ID: <CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>

Using the --jaccard_clip option in Trinity, also helps to reduce the
merging of very close genes when assembling RNAseq. A must for fungi and
other gene-dense genomes.
It increases the assembly time of RNAseq quite a lot but it is worth it.

On 8 December 2017 at 03:28, Carson Holt <carsonhh at gmail.com> wrote:

> There is no gene density parameter, and for gene overlap there is no
> distance parameter. Gene overlap on the same strand is not permitted
> though. If a gene is being excluded because of UTR overlap, you can someone
> correct for that by setting correct_est_fusion=1. That will trim back the
> UTR on those cases since this type of exclusion is often caused by false
> merging of neighboring transcripts during mRNA-seq assembly. Some organisms
> like fungi do truly have UTR overlap observed some genes, but mRNA-seq
> reads will assemble into a single transcript, so it?s hard to tease apart.
> Trimming back the UTR in those cases tends to be the most reliable solution.
>
> ?Carson
>
>
> > On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de> wrote:
> >
> > Dear MAKER developers,
> >
> > I have wondered whether there is an internal threshold or cutoff value
> for gene density (allowing only x genes in a genomic region of a certain
> size) or gene overlap (requiring to be predictions x bases apart from each
> other)?
> >
> > We have come to this idea when re-annotating a genome with another gene
> predictor. Several cases of single-exon genes not predicted by MAKER but
> flanked (i.e. close proximity) by MAKER-predictions were observed.
> >
> > Thus, I'd like to ask: Which factors (apart from sequence/signals and
> evidence/AED) influence the algorithmic prediction decision?
> >
> > Any help is highly appreciated.
> > With best wishes
> > Jeanne Wilbrandt
> >
> >
> > ~~~
> > Jeanne Wilbrandt, M.sc.
> > ORCID 0000-0002-0363-3837
> > ~~~
> > PhD candidate
> > Leibniz PhD representative, student representative
> > Leibniz Graduate School on Genomic Biodiversity Research
> > ZFMK ~ zmb ~ University of Bonn
> >
> >
> >
> > _______________________________________________
> > maker-devel mailing list
> > maker-devel at box290.bluehost.com
> > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
Xabier V?zquez-Campos, *PhD*
*Research Associate*
NSW Systems Biology Initiative
School of Biotechnology and Biomolecular Sciences
The University of New South Wales
Sydney NSW 2052 AUSTRALIA
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From carsonhh at gmail.com  Thu Dec  7 21:42:29 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 21:42:29 -0700
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
Message-ID: <2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>

I?m going to CC Michael Campbell on this. I wasn?t really involved with any of the pseudogene accessory scripts and protocols that went with the MAKER-P publication nor have I really been involved with pseudogene annotation in general. So Michael might have more insight here.

?Carson

> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I am trying to identify pseudo genes following http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
> 
> After I get the blast result, I am trying to scan pseudogenes by the command "python pseudo_wrap.py parameter". But I got the following errors. Do you have any ideas and suggestions about the errors? Thanks.
> 
> ##below shows reported errors
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py", line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
> 
> Best
> Quanwei
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From qwzhang0601 at gmail.com  Fri Dec  8 06:46:05 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Fri, 8 Dec 2017 08:46:05 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
Message-ID: <CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>

Thank you Carson and Michael.

Best
Quanwei

2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:

> I?m going to CC Michael Campbell on this. I wasn?t really involved with
> any of the pseudogene accessory scripts and protocols that went with the
> MAKER-P publication nor have I really been involved with pseudogene
> annotation in general. So Michael might have more insight here.
>
> ?Carson
>
> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>
> Hello:
>
> I am trying to identify pseudo genes following
> http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>
> After I get the blast result, I am trying to scan pseudogenes by the
> command "python pseudo_wrap.py parameter". But I got the following errors.
> Do you have any ideas and suggestions about the errors? Thanks.
>
> ##below shows reported errors
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
> line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
>
> Best
> Quanwei
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>
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From jeanne.wilbrandt at web.de  Fri Dec  8 08:26:21 2017
From: jeanne.wilbrandt at web.de (Jeanne Web)
Date: Fri, 8 Dec 2017 16:26:21 +0100
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
	<EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
	<CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>
Message-ID: <60a78a42-d09d-09ce-93e2-1fad94119ea4@web.de>


Thank you very much for the clarifications, Carson and Xabier!



On 12/08/2017 12:34 AM, Xabier V?zquez-Campos wrote:
> Using the --jaccard_clip option in Trinity, also helps to reduce the 
> merging of very close genes when assembling RNAseq. A must for fungi and 
> other gene-dense genomes.
> It increases the assembly time of RNAseq quite a lot but it is worth it.
> 
> On 8 December 2017 at 03:28, Carson Holt <carsonhh at gmail.com 
> <mailto:carsonhh at gmail.com>> wrote:
> 
>     There is no gene density parameter, and for gene overlap there is no
>     distance parameter. Gene overlap on the same strand is not permitted
>     though. If a gene is being excluded because of UTR overlap, you can
>     someone correct for that by setting correct_est_fusion=1. That will
>     trim back the UTR on those cases since this type of exclusion is
>     often caused by false merging of neighboring transcripts during
>     mRNA-seq assembly. Some organisms like fungi do truly have UTR
>     overlap observed some genes, but mRNA-seq reads will assemble into a
>     single transcript, so it?s hard to tease apart. Trimming back the
>     UTR in those cases tends to be the most reliable solution.
> 
>     ?Carson
> 
> 
>      > On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de
>     <mailto:jeanne.wilbrandt at web.de>> wrote:
>      >
>      > Dear MAKER developers,
>      >
>      > I have wondered whether there is an internal threshold or cutoff
>     value for gene density (allowing only x genes in a genomic region of
>     a certain size) or gene overlap (requiring to be predictions x bases
>     apart from each other)?
>      >
>      > We have come to this idea when re-annotating a genome with
>     another gene predictor. Several cases of single-exon genes not
>     predicted by MAKER but flanked (i.e. close proximity) by
>     MAKER-predictions were observed.
>      >
>      > Thus, I'd like to ask: Which factors (apart from sequence/signals
>     and evidence/AED) influence the algorithmic prediction decision?
>      >
>      > Any help is highly appreciated.
>      > With best wishes
>      > Jeanne Wilbrandt
>      >
>      >
>      > ~~~
>      > Jeanne Wilbrandt, M.sc.
>      > ORCID 0000-0002-0363-3837
>      > ~~~
>      > PhD candidate
>      > Leibniz PhD representative, student representative
>      > Leibniz Graduate School on Genomic Biodiversity Research
>      > ZFMK ~ zmb ~ University of Bonn
>      >
>      >
>      >
>      > _______________________________________________
>      > maker-devel mailing list
>      > maker-devel at box290.bluehost.com
>     <mailto:maker-devel at box290.bluehost.com>
>      >
>     http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>     <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
> 
> 
>     _______________________________________________
>     maker-devel mailing list
>     maker-devel at box290.bluehost.com <mailto:maker-devel at box290.bluehost.com>
>     http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>     <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
> 
> 
> 
> 
> -- 
> Xabier V?zquez-Campos, /PhD/
> /Research Associate/
> NSW Systems Biology Initiative
> School of Biotechnology and Biomolecular Sciences
> The University of New South Wales
> Sydney NSW 2052 AUSTRALIA




From michael.s.campbell1 at gmail.com  Sun Dec 10 18:37:20 2017
From: michael.s.campbell1 at gmail.com (Michael Campbell)
Date: Sun, 10 Dec 2017 20:37:20 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
Message-ID: <13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>

Hi Quanwei,

My guess would be a file format issue, but the code has evolved since I worked with it. The last time that ran it the fasta header had to contain only the sequence ID without a space after it. That was the big gotcha that I remember.

I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.

Thanks,
Mike

> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Thank you Carson and Michael.
> 
> Best
> Quanwei
> 
> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:
>> I?m going to CC Michael Campbell on this. I wasn?t really involved with any of the pseudogene accessory scripts and protocols that went with the MAKER-P publication nor have I really been involved with pseudogene annotation in general. So Michael might have more insight here.
>> 
>> ?Carson
>> 
>>> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>> 
>>> Hello:
>>> 
>>> I am trying to identify pseudo genes following http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>> 
>>> After I get the blast result, I am trying to scan pseudogenes by the command "python pseudo_wrap.py parameter". But I got the following errors. Do you have any ideas and suggestions about the errors? Thanks.
>>> 
>>> ##below shows reported errors
>>> Traceback (most recent call last):
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 4330, in <module>
>>>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 3050, in get_qualified4
>>>     N = sizes[L[0]]
>>> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>> Traceback (most recent call last):
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py", line 98, in <module>
>>>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>> IndexError: list index out of range
>>> Done!
>>> 
>>> Best
>>> Quanwei
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
> 
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From qwzhang0601 at gmail.com  Mon Dec 11 07:55:42 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 09:55:42 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
Message-ID: <CAOW6FSL+2m-PB5tZQSHmBjbvbMm8QjsHpnNQYGGtd8w73uqw-A@mail.gmail.com>

Hello Shinhan and Michael:

Thanks for your help. The sequence is shown below, which is reported
protein sequence by Maker2. The error occur when I run "pseudo_wrap.py".
With the blast results and predicted protein sequences by Maker2, I am
trying to predict the pseudo genes in the whole assembly (both for those in
the intergenic regions and those among the predicted proteins).

>maker-Contig2656-snap-gene-1.9-mRNA-1 protein AED:0.04 eAED:0.04
QI:43|1|1|1|0.85|0.87|8|1768|297
MGTSLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGMSLTMEGTVNLQLSAKSVGVFE
AFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHVKGNKVLYETYHGVFVNIQYVL
RCDMRRSLLAKDLTKTCEFIVHSVPQKGKLTPSPVDFTITPETLQNVKERALLPKFLIRG
HLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNIQIADG
DVCRSLSVPIYMVFPRLFTCPTLETTNFKVEFEINVVVLLHADHLITENFPLKLCRT


#below is the blast results
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    51
0    0    220    270    424151    424303    3.23e-25    111
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    93.103    58    4
0    170    227    423367    423540    4.19e-24    108
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    85.000    60    7
1    66    123    404001    404180    5.67e-24    107
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    48
0    0    20    67    402613    402756    3.47e-20    96.7
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    50.725    69
25    1    238    297    426022    426228    6.48e-09    63.2
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    67.308    52
15    2    118    168    417125    417277    2.07e-08    61.6
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    25
0    0    145    169    419825    419899    5.54e-06    53.9
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    76.667    30    5
1    1    30    382922    383005    0.012    43.5
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig3808    22.545    275
175    9    15    283    112218    111490    1.13e-07    59.3
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2791    26.667    60
43    1    236    295    20108374    20108550    9.6    34.3


Many thanks

Best
Quanwei

2017-12-11 8:13 GMT-05:00 Shin-Han Shiu <shius at msu.edu>:

> Hi Mike and Carson, we will take over from here. Thanks for referring the
> message to us.
>
> Quanwei, it looks like for some reason your input sequence file is missing
> "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue with the
> sequence name since the code use space as delimiter in places. Can you
> check your sequence file for this sequence and let us know how the name
> after ">" look like?
>
> Nick, sorry for bugging you. Do you have any input on this?
>
> Shinhan
>
> On 12/10/2017 8:37 PM, Michael Campbell wrote:
>
> Hi Quanwei,
>
> My guess would be a file format issue, but the code has evolved since I
> worked with it. The last time that ran it the fasta header had to contain
> only the sequence ID without a space after it. That was the big gotcha that
> I remember.
>
> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>
> Thanks,
> Mike
>
> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>
> Thank you Carson and Michael.
>
> Best
> Quanwei
>
> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:
>
>> I?m going to CC Michael Campbell on this. I wasn?t really involved with
>> any of the pseudogene accessory scripts and protocols that went with the
>> MAKER-P publication nor have I really been involved with pseudogene
>> annotation in general. So Michael might have more insight here.
>>
>> ?Carson
>>
>> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>
>> Hello:
>>
>> I am trying to identify pseudo genes following
>> http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>
>> After I get the blast result, I am trying to scan pseudogenes by the
>> command "python pseudo_wrap.py parameter". But I got the following errors.
>> Do you have any ideas and suggestions about the errors? Thanks.
>>
>> ##below shows reported errors
>> Traceback (most recent call last):
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>> line 4330, in <module>
>>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>> line 3050, in get_qualified4
>>     N = sizes[L[0]]
>> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>> Traceback (most recent call last):
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>> line 98, in <module>
>>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>> IndexError: list index out of range
>> Done!
>>
>> Best
>> Quanwei
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>
>>
>>
>
> --
> --------------------------------------
> Shin-Han Shiu
> Michigan State University
> Department of Plant Biology
> 2265 Mol Plant Sci Bldg
> (TEL) +1-517-353-7196 <(517)%20353-7196>http://goo.gl/keiHZX <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMDaQ&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=2co1_3xFiHR-sHwprAR0Wh1nMeSutUJ7n-TAibVN28c&s=Mt70of3YH2ihTytQ-XPiKJS0rOpA_YAxJEuEyLFK1BQ&e=>
> --------------------------------------
>
>
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From qwzhang0601 at gmail.com  Mon Dec 11 08:18:02 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 10:18:02 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <20171211100137.89911puy7wxi9scx@mail.msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
	<20171211100137.89911puy7wxi9scx@mail.msu.edu>
Message-ID: <CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>

Thank you Nick. The output is shown below.

Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 4330, in <module>
    parse.get_qualified4(blast,fasta,E,I,L,P,Q)
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 3050, in get_qualified4
    N = sizes[L[0]]
KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
line 98, in <module>
    oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
IndexError: list index out of range
Done!

NOTE: DatabaseOp not imported
Program  : tfasty34
Pair list: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
Fasta1   : ../../prediction2_final.proteins.fasta
Fasta2   : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
Fasta dir: /gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin/
Working d:
Flags    : -A -m 3 -q
E thres  : 1.0
Read gene pairs...
 0 pairs
Read fasta files...
Do sw...
Done!
Read BLOSUM50 matrix...
Read the sw.out file...
Compare sequences:
 total: 0 alignments
Done!
Check parameter file...
 default: ml_t=30
 default: ev_t=5
 default: ml_p=0.05
 default: id_t=40
Filter ../maker2.blastn.m...
 E:5 I:40 L:30 P:0.05
Get pseudoexons...
 pseudoexon file: ../maker2.blastn.m_parsed_G500.PE
Get phase 1 pseudogene...
 phase1 ps file: ../maker2.blastn.m_parsed_G500.PE_I500.PS1
Get pair file and subject coordinates...
 pair file  : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
 coordinates: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord
Get phase 1 pseudogene sequences...
 phase 1 ps sequence:
../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
Find stop and framshifts...
 Smith-Waterman outputs:
../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.*
 Final output:
../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.out.disable_count

The pseudogene pipeline has finished!


Best
Quanwei

2017-12-11 10:01 GMT-05:00 <panchyni at msu.edu>:

> Quanwei, in addition to checking the sequence file, can you also send
> me the standard output of the run (this the text that normally prints
> to the terminal unless you pipe it somewhere else)? This would help
> in diagnosing the problem, but Shin-Han is likely correct that it is an
> issue in the name formatting.
>
> Nick
>
> Quoting Shin-Han Shiu <shius at msu.edu>:
>
> > Hi Mike and Carson, we will take over from here. Thanks for referring
> > the message to us.
> >
> > Quanwei, it looks like for some reason your input sequence file is
> > missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue
> > with the sequence name since the code use space as delimiter in
> > places. Can you check your sequence file for this sequence and let us
> > know how the name after ">" look like?
> >
> > Nick, sorry for bugging you. Do you have any input on this?
> >
> > Shinhan
> >
> >
> > On 12/10/2017 8:37 PM, Michael Campbell wrote:
> >> Hi Quanwei,
> >>
> >> My guess would be a file format issue, but the code has evolved
> >> since I worked with it. The last time that ran it the fasta header
> >> had to contain only the sequence ID without a space after it. That
> >> was the big gotcha that I remember.
> >>
> >> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his
> lab.
> >>
> >> Thanks,
> >> Mike
> >>
> >> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com
> >> <mailto:qwzhang0601 at gmail.com>> wrote:
> >>
> >>> Thank you Carson and Michael.
> >>>
> >>> Best
> >>> Quanwei
> >>>
> >>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com
> >>> <mailto:carsonhh at gmail.com>>:
> >>>
> >>>    I?m going to CC Michael Campbell on this. I wasn?t really
> >>>    involved with any of the pseudogene accessory scripts and
> >>>    protocols that went with the MAKER-P publication nor have I
> >>>    really been involved with pseudogene annotation in general. So
> >>>    Michael might have more insight here.
> >>>
> >>>    ?Carson
> >>>
> >>>>    On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
> >>>>    <mailto:qwzhang0601 at gmail.com>> wrote:
> >>>>
> >>>>    Hello:
> >>>>
> >>>>    I am trying to identify pseudo genes following
> >>>>    http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
> >>>>    <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
> >
> >>>>
> >>>>    After I get the blast result, I am trying to scan pseudogenes by
> >>>>    the command "python pseudo_wrap.py parameter". But I got the
> >>>>    following errors. Do you have any ideas and suggestions about
> >>>>    the errors? Thanks.
> >>>>
> >>>>    ##below shows reported errors
> >>>>    Traceback (most recent call last):
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
> ParseBlast.py",
> >>>>    line 4330, in <module>
> >>>>        parse.get_qualified4(blast,fasta,E,I,L,P,Q)
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
> ParseBlast.py",
> >>>>    line 3050, in get_qualified4
> >>>>        N = sizes[L[0]]
> >>>>    KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> >>>>    Traceback (most recent call last):
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/
> script_step3b.py",
> >>>>    line 98, in <module>
> >>>>        oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> >>>>    IndexError: list index out of range
> >>>>    Done!
> >>>>
> >>>>    Best
> >>>>    Quanwei
> >>>>    _______________________________________________
> >>>>    maker-devel mailing list
> >>>>    maker-devel at box290.bluehost.com
> >>>>    <mailto:maker-devel at box290.bluehost.com>
> >>>>    http://box290.bluehost.com/mailman/listinfo/maker-devel_
> yandell-lab.org
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=SeSN1OfBVQVhi5forovCTfSJGCO1bR7Q7LuCcWlhctI&e=>
> >>>>
> >>>> <https://urldefense.proofpoint.com/v2/url?u=http-
> 3A__box290.bluehost.com_mailman_listinfo_maker-
> 2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=
> rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=
> 2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
> >>>
> >>>
> >
> > --
> > --------------------------------------
> > Shin-Han Shiu
> > Michigan State University
> > Department of Plant Biology
> > 2265 Mol Plant Sci Bldg
> > (TEL) +1-517-353-7196 <(517)%20353-7196>
> > http://goo.gl/keiHZX
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=pk3W0L_Z0dlNJDAdwrb7dA0_NSdr21LVNthDV6V43qg&e=>
> > --------------------------------------
> >
> >
>
>
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From qwzhang0601 at gmail.com  Mon Dec 11 09:47:30 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 11:47:30 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
	<20171211100137.89911puy7wxi9scx@mail.msu.edu>
	<CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>
Message-ID: <CAOW6FS+dm9npUVLMPi6VTDvFH_ZncrvN9A=V9BWRW1nm+Xx+5g@mail.gmail.com>

Hi Nick:

Thank you Nick. It seems the error is really due to the sequence name. Now
"pseudo_wrap.py" is running after I change the names. But there are still
some things seem strange.

(1) I found in the file "log_step1", it shows below information at the top.
Does it matter?

NOTE: DatabaseOp not imported
NOTE: DatabaseOp not imported
...

(2) It also shows below information
Done!
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
....

While when I look into the folder
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin/", I found
there is no file "tfasty34". Instead, there is a file named "tfasty36".
fasta36  fastf36  fastm36  fasts36  fastx36  fasty36  ggsearch36
glsearch36  lalign36  map_db  README  ssearch36  tfastf36  tfastm36
tfasts36  tfastx36  tfasty36

Do you have any suggestions on this?

Best
Quanwei

2017-12-11 10:18 GMT-05:00 Quanwei Zhang <qwzhang0601 at gmail.com>:

> Thank you Nick. The output is shown below.
>
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
> line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
>
> NOTE: DatabaseOp not imported
> Program  : tfasty34
> Pair list: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
> Fasta1   : ../../prediction2_final.proteins.fasta
> Fasta2   : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
> Fasta dir: /gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.
> 8e/bin/
> Working d:
> Flags    : -A -m 3 -q
> E thres  : 1.0
> Read gene pairs...
>  0 pairs
> Read fasta files...
> Do sw...
> Done!
> Read BLOSUM50 matrix...
> Read the sw.out file...
> Compare sequences:
>  total: 0 alignments
> Done!
> Check parameter file...
>  default: ml_t=30
>  default: ev_t=5
>  default: ml_p=0.05
>  default: id_t=40
> Filter ../maker2.blastn.m...
>  E:5 I:40 L:30 P:0.05
> Get pseudoexons...
>  pseudoexon file: ../maker2.blastn.m_parsed_G500.PE
> Get phase 1 pseudogene...
>  phase1 ps file: ../maker2.blastn.m_parsed_G500.PE_I500.PS1
> Get pair file and subject coordinates...
>  pair file  : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
>  coordinates: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord
> Get phase 1 pseudogene sequences...
>  phase 1 ps sequence: ../maker2.blastn.m_parsed_
> G500.PE_I500.PS1.subj_coord.fa
> Find stop and framshifts...
>  Smith-Waterman outputs: ../maker2.blastn.m_parsed_
> G500.PE_I500.PS1_pairs.sw.*
>  Final output: ../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.out.
> disable_count
>
> The pseudogene pipeline has finished!
>
>
> Best
> Quanwei
>
> 2017-12-11 10:01 GMT-05:00 <panchyni at msu.edu>:
>
>> Quanwei, in addition to checking the sequence file, can you also send
>> me the standard output of the run (this the text that normally prints
>> to the terminal unless you pipe it somewhere else)? This would help
>> in diagnosing the problem, but Shin-Han is likely correct that it is an
>> issue in the name formatting.
>>
>> Nick
>>
>> Quoting Shin-Han Shiu <shius at msu.edu>:
>>
>> > Hi Mike and Carson, we will take over from here. Thanks for referring
>> > the message to us.
>> >
>> > Quanwei, it looks like for some reason your input sequence file is
>> > missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue
>> > with the sequence name since the code use space as delimiter in
>> > places. Can you check your sequence file for this sequence and let us
>> > know how the name after ">" look like?
>> >
>> > Nick, sorry for bugging you. Do you have any input on this?
>> >
>> > Shinhan
>> >
>> >
>> > On 12/10/2017 8:37 PM, Michael Campbell wrote:
>> >> Hi Quanwei,
>> >>
>> >> My guess would be a file format issue, but the code has evolved
>> >> since I worked with it. The last time that ran it the fasta header
>> >> had to contain only the sequence ID without a space after it. That
>> >> was the big gotcha that I remember.
>> >>
>> >> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his
>> lab.
>> >>
>> >> Thanks,
>> >> Mike
>> >>
>> >> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com
>> >> <mailto:qwzhang0601 at gmail.com>> wrote:
>> >>
>> >>> Thank you Carson and Michael.
>> >>>
>> >>> Best
>> >>> Quanwei
>> >>>
>> >>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com
>> >>> <mailto:carsonhh at gmail.com>>:
>> >>>
>> >>>    I?m going to CC Michael Campbell on this. I wasn?t really
>> >>>    involved with any of the pseudogene accessory scripts and
>> >>>    protocols that went with the MAKER-P publication nor have I
>> >>>    really been involved with pseudogene annotation in general. So
>> >>>    Michael might have more insight here.
>> >>>
>> >>>    ?Carson
>> >>>
>> >>>>    On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>> >>>>    <mailto:qwzhang0601 at gmail.com>> wrote:
>> >>>>
>> >>>>    Hello:
>> >>>>
>> >>>>    I am trying to identify pseudo genes following
>> >>>>    http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>> >>>>    <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseu
>> dogene>
>> >>>>
>> >>>>    After I get the blast result, I am trying to scan pseudogenes by
>> >>>>    the command "python pseudo_wrap.py parameter". But I got the
>> >>>>    following errors. Do you have any ideas and suggestions about
>> >>>>    the errors? Thanks.
>> >>>>
>> >>>>    ##below shows reported errors
>> >>>>    Traceback (most recent call last):
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
>> ParseBlast.py",
>> >>>>    line 4330, in <module>
>> >>>>        parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
>> ParseBlast.py",
>> >>>>    line 3050, in get_qualified4
>> >>>>        N = sizes[L[0]]
>> >>>>    KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>> >>>>    Traceback (most recent call last):
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/s
>> cript_step3b.py",
>> >>>>    line 98, in <module>
>> >>>>        oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>> >>>>    IndexError: list index out of range
>> >>>>    Done!
>> >>>>
>> >>>>    Best
>> >>>>    Quanwei
>> >>>>    _______________________________________________
>> >>>>    maker-devel mailing list
>> >>>>    maker-devel at box290.bluehost.com
>> >>>>    <mailto:maker-devel at box290.bluehost.com>
>> >>>>    http://box290.bluehost.com/mailman/listinfo/maker-devel_yand
>> ell-lab.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=SeSN1OfBVQVhi5forovCTfSJGCO1bR7Q7LuCcWlhctI&e=>
>> >>>>
>> >>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.
>> bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.
>> org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt
>> _w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT
>> 8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>> >>>
>> >>>
>> >
>> > --
>> > --------------------------------------
>> > Shin-Han Shiu
>> > Michigan State University
>> > Department of Plant Biology
>> > 2265 Mol Plant Sci Bldg
>> > (TEL) +1-517-353-7196 <(517)%20353-7196>
>> > http://goo.gl/keiHZX
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=pk3W0L_Z0dlNJDAdwrb7dA0_NSdr21LVNthDV6V43qg&e=>
>> > --------------------------------------
>> >
>> >
>>
>>
>
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From shius at msu.edu  Mon Dec 11 06:13:12 2017
From: shius at msu.edu (Shin-Han Shiu)
Date: Mon, 11 Dec 2017 08:13:12 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
Message-ID: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>

Hi Mike and Carson, we will take over from here. Thanks for referring 
the message to us.

Quanwei, it looks like for some reason your input sequence file is 
missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue 
with the sequence name since the code use space as delimiter in places. 
Can you check your sequence file for this sequence and let us know how 
the name after ">" look like?

Nick, sorry for bugging you. Do you have any input on this?

Shinhan


On 12/10/2017 8:37 PM, Michael Campbell wrote:
> Hi Quanwei,
>
> My guess would be a file format issue, but the code has evolved since 
> I worked with it. The last time that ran it the fasta header had to 
> contain only the sequence ID without a space after it. That was the 
> big gotcha that I remember.
>
> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>
> Thanks,
> Mike
>
> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com 
> <mailto:qwzhang0601 at gmail.com>> wrote:
>
>> Thank you Carson and Michael.
>>
>> Best
>> Quanwei
>>
>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com 
>> <mailto:carsonhh at gmail.com>>:
>>
>>     I?m going to CC Michael Campbell on this. I wasn?t really
>>     involved with any of the pseudogene accessory scripts and
>>     protocols that went with the MAKER-P publication nor have I
>>     really been involved with pseudogene annotation in general. So
>>     Michael might have more insight here.
>>
>>     ?Carson
>>
>>>     On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>>>     <mailto:qwzhang0601 at gmail.com>> wrote:
>>>
>>>     Hello:
>>>
>>>     I am trying to identify pseudo genes following
>>>     http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>>     <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
>>>
>>>     After I get the blast result, I am trying to scan pseudogenes by
>>>     the command "python pseudo_wrap.py parameter". But I got the
>>>     following errors. Do you have any ideas and suggestions about
>>>     the errors? Thanks.
>>>
>>>     ##below shows reported errors
>>>     Traceback (most recent call last):
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>     line 4330, in <module>
>>>     ??? parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>     line 3050, in get_qualified4
>>>     ??? N = sizes[L[0]]
>>>     KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>>     Traceback (most recent call last):
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>>>     line 98, in <module>
>>>     ??? oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>>     IndexError: list index out of range
>>>     Done!
>>>
>>>     Best
>>>     Quanwei
>>>     _______________________________________________
>>>     maker-devel mailing list
>>>     maker-devel at box290.bluehost.com
>>>     <mailto:maker-devel at box290.bluehost.com>
>>>     https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIDaQ&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=INRHprJZS3nvj3I7v7qRvlfE1rmWrIY_tWRnylEUFO0&s=wNeNO4xtaEKyLYvP4UJ-Y_ZtwUYAXtahXdEPgYOjFt4&e=
>>>     <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>
>>

-- 
--------------------------------------
Shin-Han Shiu
Michigan State University
Department of Plant Biology
2265 Mol Plant Sci Bldg
(TEL) +1-517-353-7196
https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwIDaQ&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=INRHprJZS3nvj3I7v7qRvlfE1rmWrIY_tWRnylEUFO0&s=vgKsVpK-Ie-YtMflGCeMoYOPLBVpWJP62soYw76Aqmo&e=
--------------------------------------

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From panchyni at msu.edu  Mon Dec 11 08:01:37 2017
From: panchyni at msu.edu (panchyni at msu.edu)
Date: Mon, 11 Dec 2017 10:01:37 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
Message-ID: <20171211100137.89911puy7wxi9scx@mail.msu.edu>

Quanwei, in addition to checking the sequence file, can you also send
me the standard output of the run (this the text that normally prints
to the terminal unless you pipe it somewhere else)? This would help
in diagnosing the problem, but Shin-Han is likely correct that it is an
issue in the name formatting.

Nick

Quoting Shin-Han Shiu <shius at msu.edu>:

> Hi Mike and Carson, we will take over from here. Thanks for referring 
> the message to us.
>
> Quanwei, it looks like for some reason your input sequence file is 
> missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue 
> with the sequence name since the code use space as delimiter in 
> places. Can you check your sequence file for this sequence and let us 
> know how the name after ">" look like?
>
> Nick, sorry for bugging you. Do you have any input on this?
>
> Shinhan
>
>
> On 12/10/2017 8:37 PM, Michael Campbell wrote:
>> Hi Quanwei,
>>
>> My guess would be a file format issue, but the code has evolved 
>> since I worked with it. The last time that ran it the fasta header 
>> had to contain only the sequence ID without a space after it. That 
>> was the big gotcha that I remember.
>>
>> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>>
>> Thanks,
>> Mike
>>
>> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com 
>> <mailto:qwzhang0601 at gmail.com>> wrote:
>>
>>> Thank you Carson and Michael.
>>>
>>> Best
>>> Quanwei
>>>
>>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com 
>>> <mailto:carsonhh at gmail.com>>:
>>>
>>>? ? I?m going to CC Michael Campbell on this. I wasn?t really
>>>? ? involved with any of the pseudogene accessory scripts and
>>>? ? protocols that went with the MAKER-P publication nor have I
>>>? ? really been involved with pseudogene annotation in general. So
>>>? ? Michael might have more insight here.
>>>
>>>? ? ?Carson
>>>
>>>>? ? On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>>>>? ? <mailto:qwzhang0601 at gmail.com>> wrote:
>>>>
>>>>? ? Hello:
>>>>
>>>>? ? I am trying to identify pseudo genes following
>>>>? ? http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>>>? ? <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
>>>>
>>>>? ? After I get the blast result, I am trying to scan pseudogenes by
>>>>? ? the command "python pseudo_wrap.py parameter". But I got the
>>>>? ? following errors. Do you have any ideas and suggestions about
>>>>? ? the errors? Thanks.
>>>>
>>>>? ? ##below shows reported errors
>>>>? ? Traceback (most recent call last):
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>>? ? line 4330, in <module>
>>>>? ? ??? parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>>? ? line 3050, in get_qualified4
>>>>? ? ??? N = sizes[L[0]]
>>>>? ? KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>>>? ? Traceback (most recent call last):
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>>>>? ? line 98, in <module>
>>>>? ? ??? oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>>>? ? IndexError: list index out of range
>>>>? ? Done!
>>>>
>>>>? ? Best
>>>>? ? Quanwei
>>>>? ? _______________________________________________
>>>>? ? maker-devel mailing list
>>>>? ? maker-devel at box290.bluehost.com
>>>>? ? <mailto:maker-devel at box290.bluehost.com>
>>>>? ? https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIFAw&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=O8wVZED5PZBb8ShEI3XsYeVWU8owwPT37_nVEoRY6ak&s=mH6XtbLd3JEy6xKyCX_76sXdhbyq_e0CczfOpQvrqEk&e=
>>>>? ? 
>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>>
>>>
>
> -- 
> --------------------------------------
> Shin-Han Shiu
> Michigan State University
> Department of Plant Biology
> 2265 Mol Plant Sci Bldg
> (TEL) +1-517-353-7196
> https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwIFAw&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=O8wVZED5PZBb8ShEI3XsYeVWU8owwPT37_nVEoRY6ak&s=_zXpOrewnF9jjZxW98cCBUElJjHBanS6XxkTcOCwvdI&e=
> --------------------------------------
>
>
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From jacques.dainat at bils.se  Sat Dec  2 03:53:22 2017
From: jacques.dainat at bils.se (Jacques Dainat)
Date: Sat, 2 Dec 2017 11:53:22 +0100
Subject: [maker-devel] substr outside of string in PhatHits_utils.pm
In-Reply-To: <182CDDD3-A108-4095-9AC4-A2C198D34107@ibv.uio.no>
References: <B3C7D2DB-8716-4C9F-BF3A-BB9E82057BBB@ibv.uio.no>
	<5E5CA836-91B1-4AA8-8DC3-68FB9885EB43@gmail.com>
	<182CDDD3-A108-4095-9AC4-A2C198D34107@ibv.uio.no>
Message-ID: <381F5EAB-2C0B-4DED-BD32-573D1B1C2B47@bils.se>

Dear Carson,

I got exactly the same problem as Ole Kristian Torresen.
substr outside of string at /projects/cees/bin/maker/maker-3.01.1/bin/../lib/PhatHit_utils.pm line 850.
I also tried with the version 3.00.0 and got the same problem.

My run:
I was using gff3 alignements as gff ESTs, proteins and activating repeat masking and trna.

The code line in PhatHit_utils.pm is the following:
      my $transcript_seq  = maker::auto_annotator::get_transcript_seq($hit, $seq); # few line before
      ?..
 	#fix stop codon by walking downstream 
 	my $has_stop = $tM->is_ter_codon(substr($transcript_seq, $end-1-3, 3));   # <= line 850

So, I relaunched using the ?debug option but didn?t find anything useful.

Consequently I modified the  code to display the $transcript_seq object.
I joined the log were you can see the printed object from line 10955. 
I also printed the size of the sequence (length($transcript_seq)) and $end.
We can see that it crashes because the sequence is 1369 bp long and we try to extract a stop codon from position 1372 (1376-1-3). 


Printing the object I saw that the bug looks to occur when handling the protein evidence Q8J0D9.1.
I checked if relaunching Maker using only this protein. But everything went fine.
Could it be the EST evidence that interfers how MAKER is handling the Q8J0D9.1 protein evidence ?

I hope you could help us.

Best regards,


Jacques Dainat, PhD
NBIS (National Bioinformatics Infrastructure Sweden)
Genome Annotation Service

Address:
Uppsala University, Biomedicinska Centrum
Department of Medical Biochemistry Microbiology, Genomics
Husargatan 3, box 582
S-75123 Uppsala Sweden
Phone: +46 18 471 46 25

> On 21 Nov 2017, at 14:57, Ole Kristian T?rresen <o.k.torresen at ibv.uio.no> wrote:
> 
> Thank you Carson.
> 
> After a bit of struggling, I can confirm that the same error occurs in MAKER 3.01.2 (I guess you meant that version, couldn?t find 3.02.02).
> 
> I am providing a GFF to est_gff, with match and match_part entries. For at least one of the scaffolds, the last coordinate (column 5) is the same number as the length of the scaffold. That should be allowed by the GFF3 standard, right?
> 
> How can I troubleshoot this? The error message is not so informative. It seems that PhatHit_utils.pm tries to find a stop codon. Snipped from that file, lines 849-850:
> #fix stop codon by walking downstream
> my $has_stop = $tM->is_ter_codon(substr($transcript_seq, $end-1-3, 3));
> 
> The GFF I am using was the output of Mikado (https://www.biorxiv.org/content/early/2017/11/09/216994), which is GFF3, and then processed a bit to make it suitable for MAKER. First converted to GTF by 'mikado util convert mikado.loci.gff3 mikado.loci.gtf'
> 
> Then I selected only mRNA and exon entries, and changed mRNA to transcript to make it look like cufflinks output (and set a dummy score):
> grep -P "\tmRNA\t|\texon\t" mikado.loci.gtf |sed "s/mRNA/transcript/g" |awk -F "\t" '{$9=$9"cov \"10.0\";"; OFS="\t"; print $1, $2, $3, $4, $5, $6, $7, $8, $9}' > mikado.loci.score.gtf
> 
> Before converting with cufflinks2gff3:
> cufflinks2gff3 mikado.loci.score.gtf > ests.score.gff3
> 
> Thank you.
> 
> Ole
> 
> 
>> On 09 Nov 2017, at 17:28, Carson Holt <carsonhh at gmail.com> wrote:
>> 
>> My first guess is that if you are using gff3 files as input to anything, then there may be an  issue with your GFF3 file. My second suggestion is to try MAKER 3.02.02 to see if it has the same issue.
>> 
>> ?Carson
>> 
>> 
>>> On Nov 9, 2017, at 2:44 AM, Ole Kristian T?rresen <o.k.torresen at ibv.uio.no> wrote:
>>> 
>>> Dear all,
>>> I'm having an issue with MAKER which I'm unable to wrap my head around. Hopefully the issue is easily identifiable and resolvable for someone with more insight than me. Please find the log output attached below. I cannot find any more information than this in any logs. Many scaffolds do complete fine, but some of the longest ones have issues.
>>> 
>>> Thank you.
>>> 
>>> Sincerely,
>>> Ole K. T?rresen
>>> 
>>> Error message:
>>> 
>>> #--------- command -------------#
>>> Widget::augustus:
>>> /projects/cees/bin/augustus/augustus-3.2.3/bin/augustus  --strand=backward --species=gadMor2_code_braker2 --UTR=off --hintsfile=/tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_brak
>>> er2.auto_annotator.xdef.augustus --extrinsicCfgFile=/projects/cees/bin/augustus/augustus-3.2.3/config/extrinsic/extrinsic.MPE.cfg --AUGUSTUS_CONFIG_PATH=/projects/cees/bin/augustus/augustus-3.2
>>> .3/config /tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_braker2.auto_annotator.augustus.fasta > /tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_braker2.auto_annotato
>>> r.augustus
>>> #-------------------------------#
>>> deleted:0 genes
>>> begin called get_best_alt_splices1
>>> ...processing 0 of 2
>>> ...processing 1 of 2
>>> end called get_best_alt_splices1
>>> ...processing 0 of 20
>>> ...processing 1 of 20
>>> ...processing 2 of 20
>>> ...processing 3 of 20
>>> ...processing 4 of 20
>>> ...processing 5 of 20
>>> ...processing 6 of 20
>>> ...processing 7 of 20
>>> ...processing 8 of 20
>>> ...processing 9 of 20
>>> ...processing 10 of 20
>>> ...processing 11 of 20
>>> ...processing 12 of 20
>>> ...processing 13 of 20
>>> ...processing 14 of 20
>>> ...processing 15 of 20
>>> ...processing 16 of 20
>>> ...processing 17 of 20
>>> ...processing 18 of 20
>>> ...processing 19 of 20
>>> substr outside of string at /projects/cees/bin/maker/maker-3.1.1/bin/../lib/PhatHit_utils.pm line 850.
>>> --> rank=NA, hostname=compute-31-18.local
>>> ERROR: Failed while annotating transcripts
>>> ERROR: Chunk failed at level:1, tier_type:4
>>> FAILED CONTIG:GmG20150304_scaffold_8692
>>> 
>>> ERROR: Chunk failed at level:6, tier_type:0
>>> FAILED CONTIG:GmG20150304_scaffold_8692
>>> 
>>> examining contents of the fasta file and run log
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From chenjunhui at bgi.com  Wed Dec 13 02:56:46 2017
From: chenjunhui at bgi.com (=?gb2312?B?s8K+/LvUKEp1bmh1aSBDaGVuKQ==?=)
Date: Wed, 13 Dec 2017 09:56:46 +0000
Subject: [maker-devel] =?gb2312?b?UHJvYmxlbSBvZiBtYWtlcqO/?=
Message-ID: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>

Dear Dr?
Gooddays for you.

Recently, we used maker software to annotate our genome. However, we found that some annoted genes utr region was out of the scaffold as following:
sc0000223       maker   five_prime_UTR  101136  101159
sc0000223      0      101142

Would you like to give us some suggetions and help about this problem?
Many thanks for your help and suggestions

Look forward from you.


Best regards
Yours, hui

??? ???????
??????????
???????????????21??????7??518083
?????0755-36307095
??: chenjunhui at genomics.cn<mailto:chenjunhui at genomics.cn>

[??: ??: ??: ??: ??: ??: ??: ??: ??: cid:image003.jpg at 01D20520.996633B0]
________________________________
????
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From carsonhh at gmail.com  Thu Dec 14 09:48:57 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 14 Dec 2017 09:48:57 -0700
Subject: [maker-devel] =?utf-8?q?Problem_of_maker=EF=BC=9F?=
In-Reply-To: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>
References: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>
Message-ID: <B653630D-87AB-46CF-8865-BA68CA3478D8@gmail.com>

Hi Hui,

1. Make sure you are not using a very old version of MAKER. Current stable version is 2.31.9
2. If you are using GFF3 input as part of your run, then the issue may be in the input GFF3 file (MAKER gets the coordinates from the file you give it).
3. Delete and rerun the contig in question. The lines you gave in your example are missing columns, which may have just been a cut and paste mistake, but if not, then it?s an IO error - failure to print full line - which just needs to be rerun (can sometimes happen with slow NFS file systems).
4. Make sure you have current version of BioPerl (current CPAN version and not BioPerl-live).


The only previous occurrence of a start position issue with MAKER ( https://groups.google.com/forum/#!searchin/maker-devel/start$20position%7Csort:date/maker-devel/Yzn6XTm2aas/J2IOGyWXbVMJ ) involved the use of a very old MAKER installation together with bad installation of some prerequisites.


Thanks,
Carson



> On Dec 13, 2017, at 2:56 AM, ???(Junhui Chen) <chenjunhui at bgi.com> wrote:
> 
> Dear Dr?
> Gooddays for you.
>  
> Recently, we used maker software to annotate our genome. However, we found that some annoted genes utr region was out of the scaffold as following:
> sc0000223       maker   five_prime_UTR  101136  101159
> sc0000223      0      101142
>  
> Would you like to give us some suggetions and help about this problem?
> Many thanks for your help and suggestions
>  
> Look forward from you.
>  
>  
> Best regards
> Yours, hui
>  
> ??? ???????
> ?????????? 
> ???????????????21??????7??518083
> ?????0755-36307095
> ??: chenjunhui at genomics.cn <mailto:chenjunhui at genomics.cn>
>  
> <image001.jpg>
> ????
> ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
>  
>  
>  
>  
>  
>  
>  
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>  
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>  
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>  
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> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com <mailto:maker-devel at box290.bluehost.com>
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
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From qwzhang0601 at gmail.com  Thu Dec 21 08:06:50 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Thu, 21 Dec 2017 10:06:50 -0500
Subject: [maker-devel] how the maker2 pipeline deal with a Ns sequence
Message-ID: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>

Hello:

I wonder how the maker2 pipeline deals with a 1kb or 100bp NN sequences in
a scafold, especially when such sequences within a gene region?

Recently, we improved a rodent genome. However, at a few certain regions we
filled the gap with both sequences and Ns sequences. We found some
predicted genes in the old assembly lost in our new assembly. By looking
deep into the region, the gene region in the new assembly highly match the
old assembly at both ends of the gene, where covered most predicted coding
sequences (predicted in the old assembly). The only difference is shown in
the middle of the gene with some new sequence and Ns sequences. Attached in
the alignments between sequence in the old and new assembly in the gene
region (Y coordinate shows the new assembly).

Many thanks and Merry Christmas

Best
Quanwei
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From carsonhh at gmail.com  Thu Dec 21 09:49:23 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 21 Dec 2017 09:49:23 -0700
Subject: [maker-devel] how the maker2 pipeline deal with a Ns sequence
In-Reply-To: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>
References: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>
Message-ID: <8A736E44-5D13-408D-A60D-9F843C6D9104@gmail.com>

MAKER doesn?t do anything special for stretches of N?s. They still will be run through each step, just producing empty results in most cases for the region. Programs MAKER uses like BLAST will not align to N?s, so any alignment must either happen around the N?s for short stretches or no result is produced for long stretches (results will be produced in regions where the N?s stop). Also gene predictors will not include N?s in their models, so the N?s will either occur within the intron, or will be skipped over entirely.

?Carson


> On Dec 21, 2017, at 8:06 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I wonder how the maker2 pipeline deals with a 1kb or 100bp NN sequences in a scafold, especially when such sequences within a gene region?
> 
> Recently, we improved a rodent genome. However, at a few certain regions we filled the gap with both sequences and Ns sequences. We found some predicted genes in the old assembly lost in our new assembly. By looking deep into the region, the gene region in the new assembly highly match the old assembly at both ends of the gene, where covered most predicted coding sequences (predicted in the old assembly). The only difference is shown in the middle of the gene with some new sequence and Ns sequences. Attached in the alignments between sequence in the old and new assembly in the gene region (Y coordinate shows the new assembly).
> 
> Many thanks and Merry Christmas
> 
> Best
> Quanwei   
> <hit_matrix.png>_______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




From carsonhh at gmail.com  Fri Dec  1 08:46:30 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 1 Dec 2017 08:46:30 -0700
Subject: [maker-devel] Changing the genetic code table in MAKER
In-Reply-To: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>
References: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>
Message-ID: <C2D92775-EEDA-48A6-920F-5A8E1A2FCF3A@gmail.com>

Sorry. MAKER does not currently support alternate codon tables.

?Carson


> On Nov 30, 2017, at 11:20 PM, Yu-Hsuan Cheng <aircoolsky at gmail.com> wrote:
> 
> Hi,
> 
> This is YuHsuan Cheng, who is a PhD student from Taiwan. I want to use the MAKER combining with SNAP to annotate ciliates genome. The genetic code for ciliates is different from other species, so I am wondering that if there is any option in MAKER I can change the genetic code table? I also asked Dr. Korf about this issue, he said SNAP has no way to change the genetic code table. I will use Augustus combining with Maker later on. 
> The pipeline I used previously is as followed.
> 
> 1. MAKER (Hints from proteome and RNAseq)
> 2. MAKER to Zff  
> 3. ~/bin/maker/exe/snap/hmm-assembler.pl <http://hmm-assembler.pl/> snapFirst . > ../../snapFirst.hmm
> and then used snapFirst.hmm as hints in MAKER
> 
> Look forward to your reply. Thank you.
> 
> Best wishes,
> 
> YuHsuan 
> 
> Yu-Hsuan Cheng ???
> Institute of Molecular Biology
> Academia Sinica
> 128 Academia road, Section 2
> Nankang, Taipei 115
> Taiwan
> Phone:+886-2-2789-9216 <tel:+886%202%202789%209216> (Lab), +886-958-216-538 <tel:+886%20958%20216%20538> (Mobile phone)
> d02b48008 at ntu.edu.tw <mailto:d02b48008 at ntu.edu.tw>_______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From qwzhang0601 at gmail.com  Fri Dec  1 09:56:27 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Fri, 1 Dec 2017 11:56:27 -0500
Subject: [maker-devel] Pseudogene identification
In-Reply-To: <CAOW6FSJ=Bkqezoy1uAt68Gixfmzxy+NVCq=nf_j0ouDfoSpYog@mail.gmail.com>
References: <CAOW6FSKHVYLK1sn5-YUqVk_ucn3iRUqtjkVoAvpQT==NmK8srw@mail.gmail.com>
	<B1CC1942-5D84-48BE-A4B7-2F9B465B9E2C@gmail.com>
	<CAOW6FSJ=Bkqezoy1uAt68Gixfmzxy+NVCq=nf_j0ouDfoSpYog@mail.gmail.com>
Message-ID: <CAOW6FSL9XY8aRiJZTDVaWwO6qTBiVswmnRJ3r7c=cgqYRaskgA@mail.gmail.com>

Dear Carson:

Thanks again for all your previous help. I am still trying to identify
pseudo genes. For me, I have two goals to identify pseudo genes.
(1) Check which predicted protein coding genes are in fact pseudo genes
(especially I want to check genes belong to gene families, which are found
under expansion in our analyzed geome).
(2) Identify pseudo genes in the intergentic regions.
But the link "
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene" only
describe Identification of pseudo genes in the intergentic regions. I
wonder whether I can simple follow the pipeline and run it on the whole
genome, so I can achieve my two goals above. Or do I need to do some
adjustment of the pipeline?

At beginning, I though the pipeline is only useful to identify pseudo genes
in the intergentic regions, but in the following paper, they mentioned the
pipeline was applied to the whole genome. So I think maybe I can also do
this, but not sure whether I can simply run the same pipeline in the
following link on whole genome ("
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene").

In the paper "MAKER-P: A Tool Kit for the Rapid Creation,Management, and
Quality Control of Plant Genome Annotations". It saids "If the analysis
pipeline is applied to the whole genome, 2.5% and 0.6% of currently
annotated proteincoding genes are identified as pseudogenes due to the
presence of misidentified stops and frame shifts, respectively, indicating
that the false-positive rate of our pipeline is 3.1%."

Many thanks for your help.

Best
Quanwei


2017-08-01 9:32 GMT-04:00 Quanwei Zhang <qwzhang0601 at gmail.com>:

> Hi Carson:
>
> I took a look at the description about the pipe line of pseudogene
> identification. In my understanding it will use the annotated (predicted by
> Maker2) protein coding genes as input (i.e., query sequences), search in
> the intergenic spaces (so annotated genes will not be checked) and find the
> regions where show certain level of similarity to the annotated genes.
>
> If my understanding is correct, I think it is not what I want to do get.
> Based on the annotated coding genes from Maker2, we found some genes are
> under expansion in the new species. We want to check and make sure all the
> gene copies in the expanded gene family really function (to make sure they
> are not pseudogenes).
>
> Do you think the pseudogene identification pipe line of Maker2 can be
> helpful for my goal? Or do you have any suggestions on this?
>
> Many thanks
>
> Best
> Quanwei
>
> 2017-07-31 19:54 GMT-04:00 Carson Holt <carsonhh at gmail.com>:
>
>> The MAKER-P fork was merged back into standard MAKER with version 2.29
>> (roughly 3 years ago - a separate download no longer exists). This is
>> because MAKER-P?s functionality is almost entirely in accessory scripts and
>> written protocols. The ?/maker/bin/maker called by both MAKER2 and MAKER-P
>> is actually the same script. So no need to rerun, because if you are using
>> version 2.29 or later, you already ran it.
>>
>> Pseudogene calling is therefore handled by accessory scripts and
>> protocols you can find here ?> http://shiulab.plantbiology
>> .msu.edu/wiki/index.php/Protocol:Pseudogene
>>
>> The other MAKER-P protocols can be found here ?>
>> http://www.yandell-lab.org/software/maker-p.html
>>
>> --Carson
>>
>>
>>
>> On Jul 31, 2017, at 5:02 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>
>> Hello:
>>
>> We used Maker2 to annotate a new rodent genome. By using the annotated
>> genes we did gene family expansion analysis, and found several gene
>> families under expansion in the new rodent genome. But we want to check
>> whether some annotated genes are Pseudogenes, which lead to the expansion.
>> Do you have any suggestions on this?
>>
>> We found the Maker-P can annotate Pseudogene, but we are not sure whether
>> it is worth to repeat our annotation with Maker-P. Besides, we are not sure
>> whether the default parameters of Maker-P are good for a rodent species.
>> What's more, in my understanding the Maker-P will identify Pseudogenes in
>> the intergenic spaces (which I think the annotated coding genes will be not
>> be tested and checked).
>>
>> Do you have any suggestions to solve our problem? We do not want to
>> identify Pseudogene on the genome wide, but only want to check those genes
>> showing expansion (to make sure all those gene copies really function).
>>
>> Many thanks
>>
>> Best
>> Quanwei
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>>
>
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From patrick.tranvan at unil.ch  Fri Dec  1 13:27:09 2017
From: patrick.tranvan at unil.ch (Patrick Tran Van)
Date: Fri, 1 Dec 2017 20:27:09 +0000
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
Message-ID: <1512160093637.44052@unil.ch>

Hi,


>From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).


So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?

Because I have way more gene with keep_pred=1.


Maybe I missed something.


Thanks.


Patrick
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From carsonhh at gmail.com  Fri Dec  1 14:11:51 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 1 Dec 2017 14:11:51 -0700
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <1512160093637.44052@unil.ch>
References: <1512160093637.44052@unil.ch>
Message-ID: <CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>

keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what?s left to the final gene models. It?s basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.

?Carson


> On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch> wrote:
> 
> Hi,
> 
> From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).
> 
> So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
> Because I have way more gene with keep_pred=1. 
> 
> Maybe I missed something.
> 
> Thanks.
> 
> Patrick 

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From patrick.tranvan at unil.ch  Sun Dec  3 03:08:21 2017
From: patrick.tranvan at unil.ch (Patrick Tran Van)
Date: Sun, 3 Dec 2017 10:08:21 +0000
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
References: <1512160093637.44052@unil.ch>,
	<CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
Message-ID: <1512295765377.75322@unil.ch>

Ok for keep_preds but AED=1 means no support at all or (very) bad support ?


Patrick Tran Van

Groups Chapuisat, Robinson-Rechavi & Schwander
Department of Ecology and Evolution
University of Lausanne
Le Biophore
CH-1015 Lausanne
Switzerland
Office 3206
________________________________
From: Carson Holt <carsonhh at gmail.com>
Sent: Friday, December 1, 2017 10:11 PM
To: Patrick Tran Van
Cc: maker-devel at yandell-lab.org
Subject: Re: Difference between AED=1 and keep_preds=1

keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what's left to the final gene models. It's basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.

-Carson


On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch<mailto:patrick.tranvan at unil.ch>> wrote:

Hi,

>From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).

So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
Because I have way more gene with keep_pred=1.

Maybe I missed something.

Thanks.

Patrick

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From carsonhh at gmail.com  Sun Dec  3 14:09:22 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 3 Dec 2017 14:09:22 -0700
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <1512295765377.75322@unil.ch>
References: <1512160093637.44052@unil.ch>
	<CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
	<1512295765377.75322@unil.ch>
Message-ID: <57EE5EF4-E7B1-4DF3-B4CA-B12531AD93A1@gmail.com>

It means no support at all.

?Carson



> On Dec 3, 2017, at 3:08 AM, Patrick Tran Van <patrick.tranvan at unil.ch> wrote:
> 
> Ok for keep_preds but AED=1 means no support at all or (very) bad support ?
> 
> Patrick Tran Van
> 
> Groups Chapuisat, Robinson-Rechavi & Schwander
> Department of Ecology and Evolution
> University of Lausanne
> Le Biophore
> CH-1015 Lausanne
> Switzerland
> Office 3206
> From: Carson Holt <carsonhh at gmail.com <mailto:carsonhh at gmail.com>>
> Sent: Friday, December 1, 2017 10:11 PM
> To: Patrick Tran Van
> Cc: maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>
> Subject: Re: Difference between AED=1 and keep_preds=1
>  
> keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what?s left to the final gene models. It?s basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.
> 
> ?Carson
> 
> 
>> On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch <mailto:patrick.tranvan at unil.ch>> wrote:
>> 
>> Hi,
>> 
>> From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).
>> 
>> So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
>> Because I have way more gene with keep_pred=1. 
>> 
>> Maybe I missed something.
>> 
>> Thanks.
>> 
>> Patrick 
> 
> 

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From scott at scottcain.net  Thu Dec  7 08:53:16 2017
From: scott at scottcain.net (Scott Cain)
Date: Thu, 7 Dec 2017 10:53:16 -0500
Subject: [maker-devel] MAKER run error
In-Reply-To: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
References: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
Message-ID: <CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>

Hi Guinara,

I don't know (though my guess would be that you're running out of memory).
I'm cc'ing the MAKER developer's mailing list to see if anybody on that
list knows.

Scott


On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <tagirdzh at ualberta.ca>
wrote:

> Hello,
>
> I got this error running maker on mac:
>
> STATUS: Parsing control files...
> STATUS: Processing and indexing input FASTA files...
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> Filesize limit exceeded: 25
>
> Is there anything that could solve it?
>
> Thank you,
> Gulnara
>
>
>


-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research
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From carsonhh at gmail.com  Thu Dec  7 09:00:29 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 09:00:29 -0700
Subject: [maker-devel] MAKER run error
In-Reply-To: <CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>
References: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
	<CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>
Message-ID: <7DAB19A4-573C-4E9E-A208-7352228A502B@gmail.com>

The FASTA file gets indexed by BioPerl using BerkleyDB. I?m guessing there is something odd about your input file and the database has run out of HASHes for indexing. You can google if there is a setting you can configure in BerkleyDB on Mac. But I suspect you are doing something like giving the raw reads from an mRNA-seq experiment or DNA sequencing to MAKER (resulting in billions of entrires to be indexed), which would be incorrect. MAKER can?t handle raw data. You must first assemble it using using like Trinity for example for mRNA.

Thanks,
Carson

> On Dec 7, 2017, at 8:53 AM, Scott Cain <scott at scottcain.net> wrote:
> 
> Hi Guinara,
> 
> I don't know (though my guess would be that you're running out of memory).  I'm cc'ing the MAKER developer's mailing list to see if anybody on that list knows.
> 
> Scott
> 
> 
> On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <tagirdzh at ualberta.ca <mailto:tagirdzh at ualberta.ca>> wrote:
> Hello,
> 
> I got this error running maker on mac:
> 
> STATUS: Parsing control files...
> STATUS: Processing and indexing input FASTA files...
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> Filesize limit exceeded: 25
> 
> Is there anything that could solve it?
> 
> Thank you,
> Gulnara
> 
> 
> 
> 
> 
> -- 
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/ <http://gmod.org/>)                     216-392-3087
> Ontario Institute for Cancer Research
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From jeanne.wilbrandt at web.de  Thu Dec  7 09:13:05 2017
From: jeanne.wilbrandt at web.de (Jeanne Web)
Date: Thu, 7 Dec 2017 17:13:05 +0100
Subject: [maker-devel] [Maker] Gene density threshold?
Message-ID: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>

Dear MAKER developers,

I have wondered whether there is an internal threshold or cutoff value 
for gene density (allowing only x genes in a genomic region of a certain 
size) or gene overlap (requiring to be predictions x bases apart from 
each other)?

We have come to this idea when re-annotating a genome with another gene 
predictor. Several cases of single-exon genes not predicted by MAKER but 
flanked (i.e. close proximity) by MAKER-predictions were observed.

Thus, I'd like to ask: Which factors (apart from sequence/signals and 
evidence/AED) influence the algorithmic prediction decision?

Any help is highly appreciated.
With best wishes
Jeanne Wilbrandt


~~~
Jeanne Wilbrandt, M.sc.
ORCID 0000-0002-0363-3837
~~~
PhD candidate
Leibniz PhD representative, student representative
Leibniz Graduate School on Genomic Biodiversity Research
ZFMK ~ zmb ~ University of Bonn





From carsonhh at gmail.com  Thu Dec  7 09:28:01 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 09:28:01 -0700
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
Message-ID: <EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>

There is no gene density parameter, and for gene overlap there is no distance parameter. Gene overlap on the same strand is not permitted though. If a gene is being excluded because of UTR overlap, you can someone correct for that by setting correct_est_fusion=1. That will trim back the UTR on those cases since this type of exclusion is often caused by false merging of neighboring transcripts during mRNA-seq assembly. Some organisms like fungi do truly have UTR overlap observed some genes, but mRNA-seq reads will assemble into a single transcript, so it?s hard to tease apart. Trimming back the UTR in those cases tends to be the most reliable solution.

?Carson


> On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de> wrote:
> 
> Dear MAKER developers,
> 
> I have wondered whether there is an internal threshold or cutoff value for gene density (allowing only x genes in a genomic region of a certain size) or gene overlap (requiring to be predictions x bases apart from each other)?
> 
> We have come to this idea when re-annotating a genome with another gene predictor. Several cases of single-exon genes not predicted by MAKER but flanked (i.e. close proximity) by MAKER-predictions were observed.
> 
> Thus, I'd like to ask: Which factors (apart from sequence/signals and evidence/AED) influence the algorithmic prediction decision?
> 
> Any help is highly appreciated.
> With best wishes
> Jeanne Wilbrandt
> 
> 
> ~~~
> Jeanne Wilbrandt, M.sc.
> ORCID 0000-0002-0363-3837
> ~~~
> PhD candidate
> Leibniz PhD representative, student representative
> Leibniz Graduate School on Genomic Biodiversity Research
> ZFMK ~ zmb ~ University of Bonn
> 
> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




From qwzhang0601 at gmail.com  Thu Dec  7 14:44:03 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Thu, 7 Dec 2017 16:44:03 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
Message-ID: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>

Hello:

I am trying to identify pseudo genes following
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene

After I get the blast result, I am trying to scan pseudogenes by the
command "python pseudo_wrap.py parameter". But I got the following errors.
Do you have any ideas and suggestions about the errors? Thanks.

##below shows reported errors
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 4330, in <module>
    parse.get_qualified4(blast,fasta,E,I,L,P,Q)
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 3050, in get_qualified4
    N = sizes[L[0]]
KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
line 98, in <module>
    oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
IndexError: list index out of range
Done!

Best
Quanwei
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From xvazquezc at gmail.com  Thu Dec  7 16:34:54 2017
From: xvazquezc at gmail.com (=?UTF-8?Q?Xabier_V=C3=A1zquez=2DCampos?=)
Date: Fri, 8 Dec 2017 10:34:54 +1100
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
	<EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
Message-ID: <CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>

Using the --jaccard_clip option in Trinity, also helps to reduce the
merging of very close genes when assembling RNAseq. A must for fungi and
other gene-dense genomes.
It increases the assembly time of RNAseq quite a lot but it is worth it.

On 8 December 2017 at 03:28, Carson Holt <carsonhh at gmail.com> wrote:

> There is no gene density parameter, and for gene overlap there is no
> distance parameter. Gene overlap on the same strand is not permitted
> though. If a gene is being excluded because of UTR overlap, you can someone
> correct for that by setting correct_est_fusion=1. That will trim back the
> UTR on those cases since this type of exclusion is often caused by false
> merging of neighboring transcripts during mRNA-seq assembly. Some organisms
> like fungi do truly have UTR overlap observed some genes, but mRNA-seq
> reads will assemble into a single transcript, so it?s hard to tease apart.
> Trimming back the UTR in those cases tends to be the most reliable solution.
>
> ?Carson
>
>
> > On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de> wrote:
> >
> > Dear MAKER developers,
> >
> > I have wondered whether there is an internal threshold or cutoff value
> for gene density (allowing only x genes in a genomic region of a certain
> size) or gene overlap (requiring to be predictions x bases apart from each
> other)?
> >
> > We have come to this idea when re-annotating a genome with another gene
> predictor. Several cases of single-exon genes not predicted by MAKER but
> flanked (i.e. close proximity) by MAKER-predictions were observed.
> >
> > Thus, I'd like to ask: Which factors (apart from sequence/signals and
> evidence/AED) influence the algorithmic prediction decision?
> >
> > Any help is highly appreciated.
> > With best wishes
> > Jeanne Wilbrandt
> >
> >
> > ~~~
> > Jeanne Wilbrandt, M.sc.
> > ORCID 0000-0002-0363-3837
> > ~~~
> > PhD candidate
> > Leibniz PhD representative, student representative
> > Leibniz Graduate School on Genomic Biodiversity Research
> > ZFMK ~ zmb ~ University of Bonn
> >
> >
> >
> > _______________________________________________
> > maker-devel mailing list
> > maker-devel at box290.bluehost.com
> > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
Xabier V?zquez-Campos, *PhD*
*Research Associate*
NSW Systems Biology Initiative
School of Biotechnology and Biomolecular Sciences
The University of New South Wales
Sydney NSW 2052 AUSTRALIA
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From carsonhh at gmail.com  Thu Dec  7 21:42:29 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 21:42:29 -0700
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
Message-ID: <2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>

I?m going to CC Michael Campbell on this. I wasn?t really involved with any of the pseudogene accessory scripts and protocols that went with the MAKER-P publication nor have I really been involved with pseudogene annotation in general. So Michael might have more insight here.

?Carson

> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I am trying to identify pseudo genes following http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
> 
> After I get the blast result, I am trying to scan pseudogenes by the command "python pseudo_wrap.py parameter". But I got the following errors. Do you have any ideas and suggestions about the errors? Thanks.
> 
> ##below shows reported errors
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py", line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
> 
> Best
> Quanwei
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From qwzhang0601 at gmail.com  Fri Dec  8 06:46:05 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Fri, 8 Dec 2017 08:46:05 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
Message-ID: <CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>

Thank you Carson and Michael.

Best
Quanwei

2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:

> I?m going to CC Michael Campbell on this. I wasn?t really involved with
> any of the pseudogene accessory scripts and protocols that went with the
> MAKER-P publication nor have I really been involved with pseudogene
> annotation in general. So Michael might have more insight here.
>
> ?Carson
>
> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>
> Hello:
>
> I am trying to identify pseudo genes following
> http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>
> After I get the blast result, I am trying to scan pseudogenes by the
> command "python pseudo_wrap.py parameter". But I got the following errors.
> Do you have any ideas and suggestions about the errors? Thanks.
>
> ##below shows reported errors
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
> line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
>
> Best
> Quanwei
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>
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From jeanne.wilbrandt at web.de  Fri Dec  8 08:26:21 2017
From: jeanne.wilbrandt at web.de (Jeanne Web)
Date: Fri, 8 Dec 2017 16:26:21 +0100
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
	<EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
	<CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>
Message-ID: <60a78a42-d09d-09ce-93e2-1fad94119ea4@web.de>


Thank you very much for the clarifications, Carson and Xabier!



On 12/08/2017 12:34 AM, Xabier V?zquez-Campos wrote:
> Using the --jaccard_clip option in Trinity, also helps to reduce the 
> merging of very close genes when assembling RNAseq. A must for fungi and 
> other gene-dense genomes.
> It increases the assembly time of RNAseq quite a lot but it is worth it.
> 
> On 8 December 2017 at 03:28, Carson Holt <carsonhh at gmail.com 
> <mailto:carsonhh at gmail.com>> wrote:
> 
>     There is no gene density parameter, and for gene overlap there is no
>     distance parameter. Gene overlap on the same strand is not permitted
>     though. If a gene is being excluded because of UTR overlap, you can
>     someone correct for that by setting correct_est_fusion=1. That will
>     trim back the UTR on those cases since this type of exclusion is
>     often caused by false merging of neighboring transcripts during
>     mRNA-seq assembly. Some organisms like fungi do truly have UTR
>     overlap observed some genes, but mRNA-seq reads will assemble into a
>     single transcript, so it?s hard to tease apart. Trimming back the
>     UTR in those cases tends to be the most reliable solution.
> 
>     ?Carson
> 
> 
>      > On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de
>     <mailto:jeanne.wilbrandt at web.de>> wrote:
>      >
>      > Dear MAKER developers,
>      >
>      > I have wondered whether there is an internal threshold or cutoff
>     value for gene density (allowing only x genes in a genomic region of
>     a certain size) or gene overlap (requiring to be predictions x bases
>     apart from each other)?
>      >
>      > We have come to this idea when re-annotating a genome with
>     another gene predictor. Several cases of single-exon genes not
>     predicted by MAKER but flanked (i.e. close proximity) by
>     MAKER-predictions were observed.
>      >
>      > Thus, I'd like to ask: Which factors (apart from sequence/signals
>     and evidence/AED) influence the algorithmic prediction decision?
>      >
>      > Any help is highly appreciated.
>      > With best wishes
>      > Jeanne Wilbrandt
>      >
>      >
>      > ~~~
>      > Jeanne Wilbrandt, M.sc.
>      > ORCID 0000-0002-0363-3837
>      > ~~~
>      > PhD candidate
>      > Leibniz PhD representative, student representative
>      > Leibniz Graduate School on Genomic Biodiversity Research
>      > ZFMK ~ zmb ~ University of Bonn
>      >
>      >
>      >
>      > _______________________________________________
>      > maker-devel mailing list
>      > maker-devel at box290.bluehost.com
>     <mailto:maker-devel at box290.bluehost.com>
>      >
>     http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>     <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
> 
> 
>     _______________________________________________
>     maker-devel mailing list
>     maker-devel at box290.bluehost.com <mailto:maker-devel at box290.bluehost.com>
>     http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>     <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
> 
> 
> 
> 
> -- 
> Xabier V?zquez-Campos, /PhD/
> /Research Associate/
> NSW Systems Biology Initiative
> School of Biotechnology and Biomolecular Sciences
> The University of New South Wales
> Sydney NSW 2052 AUSTRALIA




From michael.s.campbell1 at gmail.com  Sun Dec 10 18:37:20 2017
From: michael.s.campbell1 at gmail.com (Michael Campbell)
Date: Sun, 10 Dec 2017 20:37:20 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
Message-ID: <13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>

Hi Quanwei,

My guess would be a file format issue, but the code has evolved since I worked with it. The last time that ran it the fasta header had to contain only the sequence ID without a space after it. That was the big gotcha that I remember.

I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.

Thanks,
Mike

> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Thank you Carson and Michael.
> 
> Best
> Quanwei
> 
> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:
>> I?m going to CC Michael Campbell on this. I wasn?t really involved with any of the pseudogene accessory scripts and protocols that went with the MAKER-P publication nor have I really been involved with pseudogene annotation in general. So Michael might have more insight here.
>> 
>> ?Carson
>> 
>>> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>> 
>>> Hello:
>>> 
>>> I am trying to identify pseudo genes following http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>> 
>>> After I get the blast result, I am trying to scan pseudogenes by the command "python pseudo_wrap.py parameter". But I got the following errors. Do you have any ideas and suggestions about the errors? Thanks.
>>> 
>>> ##below shows reported errors
>>> Traceback (most recent call last):
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 4330, in <module>
>>>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 3050, in get_qualified4
>>>     N = sizes[L[0]]
>>> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>> Traceback (most recent call last):
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py", line 98, in <module>
>>>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>> IndexError: list index out of range
>>> Done!
>>> 
>>> Best
>>> Quanwei
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
> 
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From qwzhang0601 at gmail.com  Mon Dec 11 07:55:42 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 09:55:42 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
Message-ID: <CAOW6FSL+2m-PB5tZQSHmBjbvbMm8QjsHpnNQYGGtd8w73uqw-A@mail.gmail.com>

Hello Shinhan and Michael:

Thanks for your help. The sequence is shown below, which is reported
protein sequence by Maker2. The error occur when I run "pseudo_wrap.py".
With the blast results and predicted protein sequences by Maker2, I am
trying to predict the pseudo genes in the whole assembly (both for those in
the intergenic regions and those among the predicted proteins).

>maker-Contig2656-snap-gene-1.9-mRNA-1 protein AED:0.04 eAED:0.04
QI:43|1|1|1|0.85|0.87|8|1768|297
MGTSLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGMSLTMEGTVNLQLSAKSVGVFE
AFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHVKGNKVLYETYHGVFVNIQYVL
RCDMRRSLLAKDLTKTCEFIVHSVPQKGKLTPSPVDFTITPETLQNVKERALLPKFLIRG
HLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNIQIADG
DVCRSLSVPIYMVFPRLFTCPTLETTNFKVEFEINVVVLLHADHLITENFPLKLCRT


#below is the blast results
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    51
0    0    220    270    424151    424303    3.23e-25    111
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    93.103    58    4
0    170    227    423367    423540    4.19e-24    108
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    85.000    60    7
1    66    123    404001    404180    5.67e-24    107
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    48
0    0    20    67    402613    402756    3.47e-20    96.7
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    50.725    69
25    1    238    297    426022    426228    6.48e-09    63.2
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    67.308    52
15    2    118    168    417125    417277    2.07e-08    61.6
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    25
0    0    145    169    419825    419899    5.54e-06    53.9
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    76.667    30    5
1    1    30    382922    383005    0.012    43.5
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig3808    22.545    275
175    9    15    283    112218    111490    1.13e-07    59.3
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2791    26.667    60
43    1    236    295    20108374    20108550    9.6    34.3


Many thanks

Best
Quanwei

2017-12-11 8:13 GMT-05:00 Shin-Han Shiu <shius at msu.edu>:

> Hi Mike and Carson, we will take over from here. Thanks for referring the
> message to us.
>
> Quanwei, it looks like for some reason your input sequence file is missing
> "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue with the
> sequence name since the code use space as delimiter in places. Can you
> check your sequence file for this sequence and let us know how the name
> after ">" look like?
>
> Nick, sorry for bugging you. Do you have any input on this?
>
> Shinhan
>
> On 12/10/2017 8:37 PM, Michael Campbell wrote:
>
> Hi Quanwei,
>
> My guess would be a file format issue, but the code has evolved since I
> worked with it. The last time that ran it the fasta header had to contain
> only the sequence ID without a space after it. That was the big gotcha that
> I remember.
>
> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>
> Thanks,
> Mike
>
> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>
> Thank you Carson and Michael.
>
> Best
> Quanwei
>
> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:
>
>> I?m going to CC Michael Campbell on this. I wasn?t really involved with
>> any of the pseudogene accessory scripts and protocols that went with the
>> MAKER-P publication nor have I really been involved with pseudogene
>> annotation in general. So Michael might have more insight here.
>>
>> ?Carson
>>
>> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>
>> Hello:
>>
>> I am trying to identify pseudo genes following
>> http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>
>> After I get the blast result, I am trying to scan pseudogenes by the
>> command "python pseudo_wrap.py parameter". But I got the following errors.
>> Do you have any ideas and suggestions about the errors? Thanks.
>>
>> ##below shows reported errors
>> Traceback (most recent call last):
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>> line 4330, in <module>
>>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>> line 3050, in get_qualified4
>>     N = sizes[L[0]]
>> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>> Traceback (most recent call last):
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>> line 98, in <module>
>>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>> IndexError: list index out of range
>> Done!
>>
>> Best
>> Quanwei
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>
>>
>>
>
> --
> --------------------------------------
> Shin-Han Shiu
> Michigan State University
> Department of Plant Biology
> 2265 Mol Plant Sci Bldg
> (TEL) +1-517-353-7196 <(517)%20353-7196>http://goo.gl/keiHZX <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMDaQ&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=2co1_3xFiHR-sHwprAR0Wh1nMeSutUJ7n-TAibVN28c&s=Mt70of3YH2ihTytQ-XPiKJS0rOpA_YAxJEuEyLFK1BQ&e=>
> --------------------------------------
>
>
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From qwzhang0601 at gmail.com  Mon Dec 11 08:18:02 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 10:18:02 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <20171211100137.89911puy7wxi9scx@mail.msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
	<20171211100137.89911puy7wxi9scx@mail.msu.edu>
Message-ID: <CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>

Thank you Nick. The output is shown below.

Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 4330, in <module>
    parse.get_qualified4(blast,fasta,E,I,L,P,Q)
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 3050, in get_qualified4
    N = sizes[L[0]]
KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
line 98, in <module>
    oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
IndexError: list index out of range
Done!

NOTE: DatabaseOp not imported
Program  : tfasty34
Pair list: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
Fasta1   : ../../prediction2_final.proteins.fasta
Fasta2   : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
Fasta dir: /gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin/
Working d:
Flags    : -A -m 3 -q
E thres  : 1.0
Read gene pairs...
 0 pairs
Read fasta files...
Do sw...
Done!
Read BLOSUM50 matrix...
Read the sw.out file...
Compare sequences:
 total: 0 alignments
Done!
Check parameter file...
 default: ml_t=30
 default: ev_t=5
 default: ml_p=0.05
 default: id_t=40
Filter ../maker2.blastn.m...
 E:5 I:40 L:30 P:0.05
Get pseudoexons...
 pseudoexon file: ../maker2.blastn.m_parsed_G500.PE
Get phase 1 pseudogene...
 phase1 ps file: ../maker2.blastn.m_parsed_G500.PE_I500.PS1
Get pair file and subject coordinates...
 pair file  : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
 coordinates: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord
Get phase 1 pseudogene sequences...
 phase 1 ps sequence:
../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
Find stop and framshifts...
 Smith-Waterman outputs:
../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.*
 Final output:
../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.out.disable_count

The pseudogene pipeline has finished!


Best
Quanwei

2017-12-11 10:01 GMT-05:00 <panchyni at msu.edu>:

> Quanwei, in addition to checking the sequence file, can you also send
> me the standard output of the run (this the text that normally prints
> to the terminal unless you pipe it somewhere else)? This would help
> in diagnosing the problem, but Shin-Han is likely correct that it is an
> issue in the name formatting.
>
> Nick
>
> Quoting Shin-Han Shiu <shius at msu.edu>:
>
> > Hi Mike and Carson, we will take over from here. Thanks for referring
> > the message to us.
> >
> > Quanwei, it looks like for some reason your input sequence file is
> > missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue
> > with the sequence name since the code use space as delimiter in
> > places. Can you check your sequence file for this sequence and let us
> > know how the name after ">" look like?
> >
> > Nick, sorry for bugging you. Do you have any input on this?
> >
> > Shinhan
> >
> >
> > On 12/10/2017 8:37 PM, Michael Campbell wrote:
> >> Hi Quanwei,
> >>
> >> My guess would be a file format issue, but the code has evolved
> >> since I worked with it. The last time that ran it the fasta header
> >> had to contain only the sequence ID without a space after it. That
> >> was the big gotcha that I remember.
> >>
> >> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his
> lab.
> >>
> >> Thanks,
> >> Mike
> >>
> >> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com
> >> <mailto:qwzhang0601 at gmail.com>> wrote:
> >>
> >>> Thank you Carson and Michael.
> >>>
> >>> Best
> >>> Quanwei
> >>>
> >>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com
> >>> <mailto:carsonhh at gmail.com>>:
> >>>
> >>>    I?m going to CC Michael Campbell on this. I wasn?t really
> >>>    involved with any of the pseudogene accessory scripts and
> >>>    protocols that went with the MAKER-P publication nor have I
> >>>    really been involved with pseudogene annotation in general. So
> >>>    Michael might have more insight here.
> >>>
> >>>    ?Carson
> >>>
> >>>>    On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
> >>>>    <mailto:qwzhang0601 at gmail.com>> wrote:
> >>>>
> >>>>    Hello:
> >>>>
> >>>>    I am trying to identify pseudo genes following
> >>>>    http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
> >>>>    <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
> >
> >>>>
> >>>>    After I get the blast result, I am trying to scan pseudogenes by
> >>>>    the command "python pseudo_wrap.py parameter". But I got the
> >>>>    following errors. Do you have any ideas and suggestions about
> >>>>    the errors? Thanks.
> >>>>
> >>>>    ##below shows reported errors
> >>>>    Traceback (most recent call last):
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
> ParseBlast.py",
> >>>>    line 4330, in <module>
> >>>>        parse.get_qualified4(blast,fasta,E,I,L,P,Q)
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
> ParseBlast.py",
> >>>>    line 3050, in get_qualified4
> >>>>        N = sizes[L[0]]
> >>>>    KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> >>>>    Traceback (most recent call last):
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/
> script_step3b.py",
> >>>>    line 98, in <module>
> >>>>        oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> >>>>    IndexError: list index out of range
> >>>>    Done!
> >>>>
> >>>>    Best
> >>>>    Quanwei
> >>>>    _______________________________________________
> >>>>    maker-devel mailing list
> >>>>    maker-devel at box290.bluehost.com
> >>>>    <mailto:maker-devel at box290.bluehost.com>
> >>>>    http://box290.bluehost.com/mailman/listinfo/maker-devel_
> yandell-lab.org
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=SeSN1OfBVQVhi5forovCTfSJGCO1bR7Q7LuCcWlhctI&e=>
> >>>>
> >>>> <https://urldefense.proofpoint.com/v2/url?u=http-
> 3A__box290.bluehost.com_mailman_listinfo_maker-
> 2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=
> rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=
> 2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
> >>>
> >>>
> >
> > --
> > --------------------------------------
> > Shin-Han Shiu
> > Michigan State University
> > Department of Plant Biology
> > 2265 Mol Plant Sci Bldg
> > (TEL) +1-517-353-7196 <(517)%20353-7196>
> > http://goo.gl/keiHZX
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=pk3W0L_Z0dlNJDAdwrb7dA0_NSdr21LVNthDV6V43qg&e=>
> > --------------------------------------
> >
> >
>
>
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From qwzhang0601 at gmail.com  Mon Dec 11 09:47:30 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 11:47:30 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
	<20171211100137.89911puy7wxi9scx@mail.msu.edu>
	<CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>
Message-ID: <CAOW6FS+dm9npUVLMPi6VTDvFH_ZncrvN9A=V9BWRW1nm+Xx+5g@mail.gmail.com>

Hi Nick:

Thank you Nick. It seems the error is really due to the sequence name. Now
"pseudo_wrap.py" is running after I change the names. But there are still
some things seem strange.

(1) I found in the file "log_step1", it shows below information at the top.
Does it matter?

NOTE: DatabaseOp not imported
NOTE: DatabaseOp not imported
...

(2) It also shows below information
Done!
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
....

While when I look into the folder
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin/", I found
there is no file "tfasty34". Instead, there is a file named "tfasty36".
fasta36  fastf36  fastm36  fasts36  fastx36  fasty36  ggsearch36
glsearch36  lalign36  map_db  README  ssearch36  tfastf36  tfastm36
tfasts36  tfastx36  tfasty36

Do you have any suggestions on this?

Best
Quanwei

2017-12-11 10:18 GMT-05:00 Quanwei Zhang <qwzhang0601 at gmail.com>:

> Thank you Nick. The output is shown below.
>
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
> line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
>
> NOTE: DatabaseOp not imported
> Program  : tfasty34
> Pair list: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
> Fasta1   : ../../prediction2_final.proteins.fasta
> Fasta2   : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
> Fasta dir: /gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.
> 8e/bin/
> Working d:
> Flags    : -A -m 3 -q
> E thres  : 1.0
> Read gene pairs...
>  0 pairs
> Read fasta files...
> Do sw...
> Done!
> Read BLOSUM50 matrix...
> Read the sw.out file...
> Compare sequences:
>  total: 0 alignments
> Done!
> Check parameter file...
>  default: ml_t=30
>  default: ev_t=5
>  default: ml_p=0.05
>  default: id_t=40
> Filter ../maker2.blastn.m...
>  E:5 I:40 L:30 P:0.05
> Get pseudoexons...
>  pseudoexon file: ../maker2.blastn.m_parsed_G500.PE
> Get phase 1 pseudogene...
>  phase1 ps file: ../maker2.blastn.m_parsed_G500.PE_I500.PS1
> Get pair file and subject coordinates...
>  pair file  : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
>  coordinates: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord
> Get phase 1 pseudogene sequences...
>  phase 1 ps sequence: ../maker2.blastn.m_parsed_
> G500.PE_I500.PS1.subj_coord.fa
> Find stop and framshifts...
>  Smith-Waterman outputs: ../maker2.blastn.m_parsed_
> G500.PE_I500.PS1_pairs.sw.*
>  Final output: ../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.out.
> disable_count
>
> The pseudogene pipeline has finished!
>
>
> Best
> Quanwei
>
> 2017-12-11 10:01 GMT-05:00 <panchyni at msu.edu>:
>
>> Quanwei, in addition to checking the sequence file, can you also send
>> me the standard output of the run (this the text that normally prints
>> to the terminal unless you pipe it somewhere else)? This would help
>> in diagnosing the problem, but Shin-Han is likely correct that it is an
>> issue in the name formatting.
>>
>> Nick
>>
>> Quoting Shin-Han Shiu <shius at msu.edu>:
>>
>> > Hi Mike and Carson, we will take over from here. Thanks for referring
>> > the message to us.
>> >
>> > Quanwei, it looks like for some reason your input sequence file is
>> > missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue
>> > with the sequence name since the code use space as delimiter in
>> > places. Can you check your sequence file for this sequence and let us
>> > know how the name after ">" look like?
>> >
>> > Nick, sorry for bugging you. Do you have any input on this?
>> >
>> > Shinhan
>> >
>> >
>> > On 12/10/2017 8:37 PM, Michael Campbell wrote:
>> >> Hi Quanwei,
>> >>
>> >> My guess would be a file format issue, but the code has evolved
>> >> since I worked with it. The last time that ran it the fasta header
>> >> had to contain only the sequence ID without a space after it. That
>> >> was the big gotcha that I remember.
>> >>
>> >> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his
>> lab.
>> >>
>> >> Thanks,
>> >> Mike
>> >>
>> >> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com
>> >> <mailto:qwzhang0601 at gmail.com>> wrote:
>> >>
>> >>> Thank you Carson and Michael.
>> >>>
>> >>> Best
>> >>> Quanwei
>> >>>
>> >>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com
>> >>> <mailto:carsonhh at gmail.com>>:
>> >>>
>> >>>    I?m going to CC Michael Campbell on this. I wasn?t really
>> >>>    involved with any of the pseudogene accessory scripts and
>> >>>    protocols that went with the MAKER-P publication nor have I
>> >>>    really been involved with pseudogene annotation in general. So
>> >>>    Michael might have more insight here.
>> >>>
>> >>>    ?Carson
>> >>>
>> >>>>    On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>> >>>>    <mailto:qwzhang0601 at gmail.com>> wrote:
>> >>>>
>> >>>>    Hello:
>> >>>>
>> >>>>    I am trying to identify pseudo genes following
>> >>>>    http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>> >>>>    <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseu
>> dogene>
>> >>>>
>> >>>>    After I get the blast result, I am trying to scan pseudogenes by
>> >>>>    the command "python pseudo_wrap.py parameter". But I got the
>> >>>>    following errors. Do you have any ideas and suggestions about
>> >>>>    the errors? Thanks.
>> >>>>
>> >>>>    ##below shows reported errors
>> >>>>    Traceback (most recent call last):
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
>> ParseBlast.py",
>> >>>>    line 4330, in <module>
>> >>>>        parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
>> ParseBlast.py",
>> >>>>    line 3050, in get_qualified4
>> >>>>        N = sizes[L[0]]
>> >>>>    KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>> >>>>    Traceback (most recent call last):
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/s
>> cript_step3b.py",
>> >>>>    line 98, in <module>
>> >>>>        oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>> >>>>    IndexError: list index out of range
>> >>>>    Done!
>> >>>>
>> >>>>    Best
>> >>>>    Quanwei
>> >>>>    _______________________________________________
>> >>>>    maker-devel mailing list
>> >>>>    maker-devel at box290.bluehost.com
>> >>>>    <mailto:maker-devel at box290.bluehost.com>
>> >>>>    http://box290.bluehost.com/mailman/listinfo/maker-devel_yand
>> ell-lab.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=SeSN1OfBVQVhi5forovCTfSJGCO1bR7Q7LuCcWlhctI&e=>
>> >>>>
>> >>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.
>> bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.
>> org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt
>> _w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT
>> 8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>> >>>
>> >>>
>> >
>> > --
>> > --------------------------------------
>> > Shin-Han Shiu
>> > Michigan State University
>> > Department of Plant Biology
>> > 2265 Mol Plant Sci Bldg
>> > (TEL) +1-517-353-7196 <(517)%20353-7196>
>> > http://goo.gl/keiHZX
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=pk3W0L_Z0dlNJDAdwrb7dA0_NSdr21LVNthDV6V43qg&e=>
>> > --------------------------------------
>> >
>> >
>>
>>
>
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From shius at msu.edu  Mon Dec 11 06:13:12 2017
From: shius at msu.edu (Shin-Han Shiu)
Date: Mon, 11 Dec 2017 08:13:12 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
Message-ID: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>

Hi Mike and Carson, we will take over from here. Thanks for referring 
the message to us.

Quanwei, it looks like for some reason your input sequence file is 
missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue 
with the sequence name since the code use space as delimiter in places. 
Can you check your sequence file for this sequence and let us know how 
the name after ">" look like?

Nick, sorry for bugging you. Do you have any input on this?

Shinhan


On 12/10/2017 8:37 PM, Michael Campbell wrote:
> Hi Quanwei,
>
> My guess would be a file format issue, but the code has evolved since 
> I worked with it. The last time that ran it the fasta header had to 
> contain only the sequence ID without a space after it. That was the 
> big gotcha that I remember.
>
> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>
> Thanks,
> Mike
>
> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com 
> <mailto:qwzhang0601 at gmail.com>> wrote:
>
>> Thank you Carson and Michael.
>>
>> Best
>> Quanwei
>>
>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com 
>> <mailto:carsonhh at gmail.com>>:
>>
>>     I?m going to CC Michael Campbell on this. I wasn?t really
>>     involved with any of the pseudogene accessory scripts and
>>     protocols that went with the MAKER-P publication nor have I
>>     really been involved with pseudogene annotation in general. So
>>     Michael might have more insight here.
>>
>>     ?Carson
>>
>>>     On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>>>     <mailto:qwzhang0601 at gmail.com>> wrote:
>>>
>>>     Hello:
>>>
>>>     I am trying to identify pseudo genes following
>>>     http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>>     <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
>>>
>>>     After I get the blast result, I am trying to scan pseudogenes by
>>>     the command "python pseudo_wrap.py parameter". But I got the
>>>     following errors. Do you have any ideas and suggestions about
>>>     the errors? Thanks.
>>>
>>>     ##below shows reported errors
>>>     Traceback (most recent call last):
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>     line 4330, in <module>
>>>     ??? parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>     line 3050, in get_qualified4
>>>     ??? N = sizes[L[0]]
>>>     KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>>     Traceback (most recent call last):
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>>>     line 98, in <module>
>>>     ??? oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>>     IndexError: list index out of range
>>>     Done!
>>>
>>>     Best
>>>     Quanwei
>>>     _______________________________________________
>>>     maker-devel mailing list
>>>     maker-devel at box290.bluehost.com
>>>     <mailto:maker-devel at box290.bluehost.com>
>>>     https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIDaQ&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=INRHprJZS3nvj3I7v7qRvlfE1rmWrIY_tWRnylEUFO0&s=wNeNO4xtaEKyLYvP4UJ-Y_ZtwUYAXtahXdEPgYOjFt4&e=
>>>     <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>
>>

-- 
--------------------------------------
Shin-Han Shiu
Michigan State University
Department of Plant Biology
2265 Mol Plant Sci Bldg
(TEL) +1-517-353-7196
https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwIDaQ&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=INRHprJZS3nvj3I7v7qRvlfE1rmWrIY_tWRnylEUFO0&s=vgKsVpK-Ie-YtMflGCeMoYOPLBVpWJP62soYw76Aqmo&e=
--------------------------------------

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From panchyni at msu.edu  Mon Dec 11 08:01:37 2017
From: panchyni at msu.edu (panchyni at msu.edu)
Date: Mon, 11 Dec 2017 10:01:37 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
Message-ID: <20171211100137.89911puy7wxi9scx@mail.msu.edu>

Quanwei, in addition to checking the sequence file, can you also send
me the standard output of the run (this the text that normally prints
to the terminal unless you pipe it somewhere else)? This would help
in diagnosing the problem, but Shin-Han is likely correct that it is an
issue in the name formatting.

Nick

Quoting Shin-Han Shiu <shius at msu.edu>:

> Hi Mike and Carson, we will take over from here. Thanks for referring 
> the message to us.
>
> Quanwei, it looks like for some reason your input sequence file is 
> missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue 
> with the sequence name since the code use space as delimiter in 
> places. Can you check your sequence file for this sequence and let us 
> know how the name after ">" look like?
>
> Nick, sorry for bugging you. Do you have any input on this?
>
> Shinhan
>
>
> On 12/10/2017 8:37 PM, Michael Campbell wrote:
>> Hi Quanwei,
>>
>> My guess would be a file format issue, but the code has evolved 
>> since I worked with it. The last time that ran it the fasta header 
>> had to contain only the sequence ID without a space after it. That 
>> was the big gotcha that I remember.
>>
>> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>>
>> Thanks,
>> Mike
>>
>> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com 
>> <mailto:qwzhang0601 at gmail.com>> wrote:
>>
>>> Thank you Carson and Michael.
>>>
>>> Best
>>> Quanwei
>>>
>>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com 
>>> <mailto:carsonhh at gmail.com>>:
>>>
>>>? ? I?m going to CC Michael Campbell on this. I wasn?t really
>>>? ? involved with any of the pseudogene accessory scripts and
>>>? ? protocols that went with the MAKER-P publication nor have I
>>>? ? really been involved with pseudogene annotation in general. So
>>>? ? Michael might have more insight here.
>>>
>>>? ? ?Carson
>>>
>>>>? ? On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>>>>? ? <mailto:qwzhang0601 at gmail.com>> wrote:
>>>>
>>>>? ? Hello:
>>>>
>>>>? ? I am trying to identify pseudo genes following
>>>>? ? http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>>>? ? <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
>>>>
>>>>? ? After I get the blast result, I am trying to scan pseudogenes by
>>>>? ? the command "python pseudo_wrap.py parameter". But I got the
>>>>? ? following errors. Do you have any ideas and suggestions about
>>>>? ? the errors? Thanks.
>>>>
>>>>? ? ##below shows reported errors
>>>>? ? Traceback (most recent call last):
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>>? ? line 4330, in <module>
>>>>? ? ??? parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>>? ? line 3050, in get_qualified4
>>>>? ? ??? N = sizes[L[0]]
>>>>? ? KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>>>? ? Traceback (most recent call last):
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>>>>? ? line 98, in <module>
>>>>? ? ??? oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>>>? ? IndexError: list index out of range
>>>>? ? Done!
>>>>
>>>>? ? Best
>>>>? ? Quanwei
>>>>? ? _______________________________________________
>>>>? ? maker-devel mailing list
>>>>? ? maker-devel at box290.bluehost.com
>>>>? ? <mailto:maker-devel at box290.bluehost.com>
>>>>? ? https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIFAw&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=O8wVZED5PZBb8ShEI3XsYeVWU8owwPT37_nVEoRY6ak&s=mH6XtbLd3JEy6xKyCX_76sXdhbyq_e0CczfOpQvrqEk&e=
>>>>? ? 
>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>>
>>>
>
> -- 
> --------------------------------------
> Shin-Han Shiu
> Michigan State University
> Department of Plant Biology
> 2265 Mol Plant Sci Bldg
> (TEL) +1-517-353-7196
> https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwIFAw&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=O8wVZED5PZBb8ShEI3XsYeVWU8owwPT37_nVEoRY6ak&s=_zXpOrewnF9jjZxW98cCBUElJjHBanS6XxkTcOCwvdI&e=
> --------------------------------------
>
>
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From jacques.dainat at bils.se  Sat Dec  2 03:53:22 2017
From: jacques.dainat at bils.se (Jacques Dainat)
Date: Sat, 2 Dec 2017 11:53:22 +0100
Subject: [maker-devel] substr outside of string in PhatHits_utils.pm
In-Reply-To: <182CDDD3-A108-4095-9AC4-A2C198D34107@ibv.uio.no>
References: <B3C7D2DB-8716-4C9F-BF3A-BB9E82057BBB@ibv.uio.no>
	<5E5CA836-91B1-4AA8-8DC3-68FB9885EB43@gmail.com>
	<182CDDD3-A108-4095-9AC4-A2C198D34107@ibv.uio.no>
Message-ID: <381F5EAB-2C0B-4DED-BD32-573D1B1C2B47@bils.se>

Dear Carson,

I got exactly the same problem as Ole Kristian Torresen.
substr outside of string at /projects/cees/bin/maker/maker-3.01.1/bin/../lib/PhatHit_utils.pm line 850.
I also tried with the version 3.00.0 and got the same problem.

My run:
I was using gff3 alignements as gff ESTs, proteins and activating repeat masking and trna.

The code line in PhatHit_utils.pm is the following:
      my $transcript_seq  = maker::auto_annotator::get_transcript_seq($hit, $seq); # few line before
      ?..
 	#fix stop codon by walking downstream 
 	my $has_stop = $tM->is_ter_codon(substr($transcript_seq, $end-1-3, 3));   # <= line 850

So, I relaunched using the ?debug option but didn?t find anything useful.

Consequently I modified the  code to display the $transcript_seq object.
I joined the log were you can see the printed object from line 10955. 
I also printed the size of the sequence (length($transcript_seq)) and $end.
We can see that it crashes because the sequence is 1369 bp long and we try to extract a stop codon from position 1372 (1376-1-3). 


Printing the object I saw that the bug looks to occur when handling the protein evidence Q8J0D9.1.
I checked if relaunching Maker using only this protein. But everything went fine.
Could it be the EST evidence that interfers how MAKER is handling the Q8J0D9.1 protein evidence ?

I hope you could help us.

Best regards,


Jacques Dainat, PhD
NBIS (National Bioinformatics Infrastructure Sweden)
Genome Annotation Service

Address:
Uppsala University, Biomedicinska Centrum
Department of Medical Biochemistry Microbiology, Genomics
Husargatan 3, box 582
S-75123 Uppsala Sweden
Phone: +46 18 471 46 25

> On 21 Nov 2017, at 14:57, Ole Kristian T?rresen <o.k.torresen at ibv.uio.no> wrote:
> 
> Thank you Carson.
> 
> After a bit of struggling, I can confirm that the same error occurs in MAKER 3.01.2 (I guess you meant that version, couldn?t find 3.02.02).
> 
> I am providing a GFF to est_gff, with match and match_part entries. For at least one of the scaffolds, the last coordinate (column 5) is the same number as the length of the scaffold. That should be allowed by the GFF3 standard, right?
> 
> How can I troubleshoot this? The error message is not so informative. It seems that PhatHit_utils.pm tries to find a stop codon. Snipped from that file, lines 849-850:
> #fix stop codon by walking downstream
> my $has_stop = $tM->is_ter_codon(substr($transcript_seq, $end-1-3, 3));
> 
> The GFF I am using was the output of Mikado (https://www.biorxiv.org/content/early/2017/11/09/216994), which is GFF3, and then processed a bit to make it suitable for MAKER. First converted to GTF by 'mikado util convert mikado.loci.gff3 mikado.loci.gtf'
> 
> Then I selected only mRNA and exon entries, and changed mRNA to transcript to make it look like cufflinks output (and set a dummy score):
> grep -P "\tmRNA\t|\texon\t" mikado.loci.gtf |sed "s/mRNA/transcript/g" |awk -F "\t" '{$9=$9"cov \"10.0\";"; OFS="\t"; print $1, $2, $3, $4, $5, $6, $7, $8, $9}' > mikado.loci.score.gtf
> 
> Before converting with cufflinks2gff3:
> cufflinks2gff3 mikado.loci.score.gtf > ests.score.gff3
> 
> Thank you.
> 
> Ole
> 
> 
>> On 09 Nov 2017, at 17:28, Carson Holt <carsonhh at gmail.com> wrote:
>> 
>> My first guess is that if you are using gff3 files as input to anything, then there may be an  issue with your GFF3 file. My second suggestion is to try MAKER 3.02.02 to see if it has the same issue.
>> 
>> ?Carson
>> 
>> 
>>> On Nov 9, 2017, at 2:44 AM, Ole Kristian T?rresen <o.k.torresen at ibv.uio.no> wrote:
>>> 
>>> Dear all,
>>> I'm having an issue with MAKER which I'm unable to wrap my head around. Hopefully the issue is easily identifiable and resolvable for someone with more insight than me. Please find the log output attached below. I cannot find any more information than this in any logs. Many scaffolds do complete fine, but some of the longest ones have issues.
>>> 
>>> Thank you.
>>> 
>>> Sincerely,
>>> Ole K. T?rresen
>>> 
>>> Error message:
>>> 
>>> #--------- command -------------#
>>> Widget::augustus:
>>> /projects/cees/bin/augustus/augustus-3.2.3/bin/augustus  --strand=backward --species=gadMor2_code_braker2 --UTR=off --hintsfile=/tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_brak
>>> er2.auto_annotator.xdef.augustus --extrinsicCfgFile=/projects/cees/bin/augustus/augustus-3.2.3/config/extrinsic/extrinsic.MPE.cfg --AUGUSTUS_CONFIG_PATH=/projects/cees/bin/augustus/augustus-3.2
>>> .3/config /tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_braker2.auto_annotator.augustus.fasta > /tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_braker2.auto_annotato
>>> r.augustus
>>> #-------------------------------#
>>> deleted:0 genes
>>> begin called get_best_alt_splices1
>>> ...processing 0 of 2
>>> ...processing 1 of 2
>>> end called get_best_alt_splices1
>>> ...processing 0 of 20
>>> ...processing 1 of 20
>>> ...processing 2 of 20
>>> ...processing 3 of 20
>>> ...processing 4 of 20
>>> ...processing 5 of 20
>>> ...processing 6 of 20
>>> ...processing 7 of 20
>>> ...processing 8 of 20
>>> ...processing 9 of 20
>>> ...processing 10 of 20
>>> ...processing 11 of 20
>>> ...processing 12 of 20
>>> ...processing 13 of 20
>>> ...processing 14 of 20
>>> ...processing 15 of 20
>>> ...processing 16 of 20
>>> ...processing 17 of 20
>>> ...processing 18 of 20
>>> ...processing 19 of 20
>>> substr outside of string at /projects/cees/bin/maker/maker-3.1.1/bin/../lib/PhatHit_utils.pm line 850.
>>> --> rank=NA, hostname=compute-31-18.local
>>> ERROR: Failed while annotating transcripts
>>> ERROR: Chunk failed at level:1, tier_type:4
>>> FAILED CONTIG:GmG20150304_scaffold_8692
>>> 
>>> ERROR: Chunk failed at level:6, tier_type:0
>>> FAILED CONTIG:GmG20150304_scaffold_8692
>>> 
>>> examining contents of the fasta file and run log
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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Job <83635> is submitted to queue <highmem>.
Scientific Linux release 6.9 (Carbon)
Kernel 2.6.32-696.el6.x86_64 on an x86_64

perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
perl version v5.10.1
****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
****MODULE VERSION INFO
****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../****MODULE VERSION INFO
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usrlib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
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	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
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	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
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	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
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	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
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	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
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	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
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	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
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	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
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lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
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	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
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	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
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	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
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	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
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	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
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	3.3	Cwd	/usr****MODULE VERSION INFO
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
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	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
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	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
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	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
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	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
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	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
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	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
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	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
perl version v5.10.1
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
****MODULE VERSION INFO
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
****MODULE VERSION INFO
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
perl version v5.10.1
perl version v5.10.1
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
****MODULE VERSION INFO
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
perl version v5.10.1
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
perl version v5.10.1
****MODULE VERSION INFO
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
perl version v5.10.1
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
****MODULE VERSION INFO
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
perl version v5.10.1
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
****MODULE VERSION INFO
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
perl version v5.10.1
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
perl version v5.10.1
****MODULE VERSION INFO
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
perl version v5.10.1
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
perl version v5.10.1
****MODULE VERSION INFO
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
perl version v5.10.1
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
****MODULE VERSION INFO
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
perl version v5.10.1
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
****MODULE VERSION INFO
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
perl version v5.10.1
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
****MODULE VERSION INFO
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm












	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm


	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOW	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
N	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/paren	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/I	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchI	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	ma	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/biop





	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
t.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
terator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
O/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
ker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
erl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	1.04	strict	/usr/share/perl5/strict.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	2.14	base	/usr/share/perl5/base.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	1.00	locale	/usr/share/perl5/locale.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.09	re	/usr/lib64/perl5/re.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.07	overload	/usr/share/perl5/overload.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
STATUS: Parsing control files...
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm


	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
Calling GI::load_control_files at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 444.
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm


	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	2.14	base	/usr/share/perl5/base.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
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	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
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	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
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	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
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	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
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	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
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	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
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	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
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	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
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	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
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	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
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	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
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	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
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	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
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	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
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	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
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	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
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	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
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	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
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	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm


	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm




	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm




	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm






	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
****MODULE VERSION INFO
perl version v5.10.1
perl version v5.10.1
****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
perl version v5.10.1
****MODULE VERSION INFO
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm


	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm


	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 456.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 458.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 476.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
STATUS: Processing and indexing input FASTA files...
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 525.
Calling GI::split_db at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 606.
Calling GI::split_db at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 606.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::split_db at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 606.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::split_db at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 606.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 548.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 548.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 548.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 548.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling GI::create_blastdb at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 570.
Calling File::Path::rmtree at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling Iterator::Any::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling Iterator::Any::nextDef at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling Iterator::Any::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling mkdir at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
STATUS: Setting up database for any GFF3 input...
Calling GFFDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 625.
Calling GFFDB::next_build at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 627.
Calling ds_utility::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 631.
A data structure will be created for you at:
/projects/annotation/thielavia_terrestris/maker/test/unitig_14.maker.output/unitig_14_datastore

To access files for individual sequences use the datastore index:
/projects/annotation/thielavia_terrestris/maker/test/unitig_14.maker.output/unitig_14_master_datastore_index.log

Calling Datastore::MD5::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 632.
Calling Iterator::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 635.
Calling Iterator::Fasta::skip_file at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 637.
Calling Iterator::Fasta::step at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 639.
STATUS: Now running MAKER...
examining contents of the fasta file and run log
Calling Datastore::MD5::mkdir at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 438.
Calling Datastore::MD5::id_to_dir at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 438.
Calling uri_escape at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 438.
Calling File::Path::mkpath at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 438.



--Next Contig--

Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Processing run.log file...
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: unitig_14|quiver
Length: 240068
#---------------------------------------------------------------------


Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 461.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
setting up GFF3 output and fasta chunks
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 585.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
processing the chunk divide
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
preparing evidence clusters for annotations
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
cleaning clusters....
total clusters:1 now processing 0
cleaning clusters....
total clusters:1 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:15 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
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 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:15 now processing 0
 ...processing 0 of 5
 ...processing 1 of 5
 ...processing 2 of 5
 ...processing 3 of 5
 ...processing 4 of 5
total clusters:15 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:15 now processing 0
 ...processing 0 of 12
 ...processing 1 of 12
 ...processing 2 of 12
 ...processing 3 of 12
 ...processing 4 of 12
 ...processing 5 of 12
 ...processing 6 of 12
 ...processing 7 of 12
 ...processing 8 of 12
 ...processing 9 of 12
Preparing evidence for hint based annotation
 ...processing 10 of 12
 ...processing 11 of 12
total clusters:15 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:15 now processing 0
 ...processing 0 of 19
 ...processing 1 of 19
 ...processing 2 of 19
 ...processing 3 of 19
 ...processing 4 of 19
 ...processing 5 of 19
 ...processing 6 of 19
in cluster::shadow_cluster...
 ...processing 7 of 19
...finished clustering.
cleaning clusters....
total clusters:6 now processing 0
total clusters:6 now processing 0
total clusters:6 now processing 0
 ...processing 0 of 30
 ...processing 1 of 30
 ...processing 8 of 19
 ...processing 2 of 30
 ...processing 3 of 30
 ...processing 9 of 19
 ...processing 10 of 19
 ...processing 4 of 30
 ...processing 11 of 19
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 ...processing 6 of 30
 ...processing 13 of 19
 ...processing 14 of 19
 ...processing 7 of 30
 ...processing 15 of 19
 ...processing 16 of 19
 ...processing 17 of 19
 ...processing 8 of 30
 ...processing 18 of 19
total clusters:15 now processing 0
 ...processing 0 of 16
 ...processing 1 of 16
 ...processing 2 of 16
 ...processing 3 of 16
 ...processing 4 of 16
 ...processing 5 of 16
 ...processing 9 of 30
 ...processing 6 of 16
 ...processing 7 of 16
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 ...processing 10 of 30
 ...processing 11 of 16
 ...processing 12 of 16
 ...processing 11 of 30
 ...processing 13 of 16
 ...processing 14 of 16
 ...processing 12 of 30
 ...processing 15 of 16
 ...processing 13 of 30
total clusters:15 now processing 0
total clusters:15 now processing 0
 ...processing 0 of 14
 ...processing 1 of 14
 ...processing 2 of 14
 ...processing 14 of 30
 ...processing 3 of 14
 ...processing 4 of 14
 ...processing 5 of 14
 ...processing 15 of 30
 ...processing 6 of 14
 ...processing 7 of 14
 ...processing 8 of 14
 ...processing 9 of 14
 ...processing 16 of 30
 ...processing 10 of 14
 ...processing 11 of 14
 ...processing 12 of 14
 ...processing 13 of 14
total clusters:15 now processing 0
 ...processing 0 of 6
 ...processing 1 of 6
 ...processing 2 of 6
 ...processing 3 of 6
 ...processing 17 of 30
 ...processing 4 of 6
 ...processing 5 of 6
total clusters:15 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:15 now processing 0
 ...processing 0 of 10
 ...processing 1 of 10
 ...processing 2 of 10
 ...processing 3 of 10
 ...processing 4 of 10
 ...processing 5 of 10
 ...processing 6 of 10
 ...processing 7 of 10
 ...processing 8 of 10
 ...processing 18 of 30
 ...processing 9 of 10
total clusters:15 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:15 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:15 now processing 0
 ...processing 0 of 16
 ...processing 1 of 16
 ...processing 2 of 16
 ...processing 3 of 16
 ...processing 4 of 16
 ...processing 5 of 16
 ...processing 19 of 30
 ...processing 6 of 16
 ...processing 7 of 16
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 ...processing 9 of 16
 ...processing 10 of 16
 ...processing 11 of 16
 ...processing 21 of 30
 ...processing 12 of 16
 ...processing 22 of 30
 ...processing 13 of 16
 ...processing 14 of 16
 ...processing 23 of 30
 ...processing 15 of 16
in cluster::shadow_cluster...
...finished clustering.
 ...processing 24 of 30
 ...processing 25 of 30
 ...processing 26 of 30
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:10 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 27 of 30
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
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 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 28 of 30
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:10 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:10 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:10 now processing 0
 ...processing 0 of 9
 ...processing 1 of 9
 ...processing 2 of 9
 ...processing 3 of 9
 ...processing 4 of 9
 ...trimming the rest
total clusters:6 now processing 0
 ...processing 0 of 7
 ...processing 1 of 7
 ...processing 2 of 7
 ...processing 3 of 7
 ...processing 5 of 9
 ...processing 4 of 7
 ...processing 5 of 7
 ...processing 6 of 9
 ...processing 6 of 7
total clusters:6 now processing 0
 ...processing 0 of 16
 ...processing 1 of 16
 ...processing 2 of 16
 ...processing 7 of 9
 ...processing 3 of 16
 ...processing 8 of 9
 ...processing 4 of 16
 ...processing 5 of 16
total clusters:10 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
 ...processing 6 of 16
total clusters:10 now processing 0
 ...processing 0 of 17
 ...processing 1 of 17
 ...processing 2 of 17
 ...processing 7 of 16
 ...processing 3 of 17
 ...processing 8 of 16
 ...processing 4 of 17
 ...processing 9 of 16
 ...processing 5 of 17
 ...processing 10 of 16
 ...processing 11 of 16
 ...processing 6 of 17
 ...processing 12 of 16
 ...processing 13 of 16
 ...processing 7 of 17
 ...processing 14 of 16
 ...processing 8 of 17
 ...processing 15 of 16
total clusters:6 now processing 0
 ...processing 9 of 17
 ...processing 0 of 43
 ...processing 1 of 43
 ...processing 2 of 43
 ...processing 3 of 43
 ...processing 4 of 43
 ...processing 10 of 17
 ...processing 5 of 43
 ...processing 6 of 43
 ...processing 7 of 43
 ...processing 11 of 17
 ...processing 8 of 43
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 ...processing 12 of 17
 ...processing 10 of 43
 ...processing 11 of 43
 ...processing 13 of 17
 ...processing 12 of 43
 ...processing 14 of 17
 ...processing 13 of 43
 ...processing 15 of 17
 ...processing 14 of 43
 ...processing 15 of 43
 ...processing 16 of 17
 ...processing 16 of 43
total clusters:10 now processing 0
 ...processing 0 of 16
 ...processing 1 of 16
 ...processing 2 of 16
 ...processing 3 of 16
 ...processing 4 of 16
 ...processing 17 of 43
 ...processing 5 of 16
 ...processing 6 of 16
 ...processing 18 of 43
 ...processing 7 of 16
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 ...processing 19 of 43
 ...processing 10 of 16
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 ...processing 11 of 16
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 ...processing 12 of 16
 ...processing 22 of 43
 ...processing 23 of 43
 ...processing 13 of 16
 ...processing 24 of 43
 ...processing 14 of 16
 ...processing 25 of 43
 ...processing 15 of 16
 ...processing 26 of 43
 ...processing 27 of 43
total clusters:10 now processing 0
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 28 of 43
 ...processing 2 of 13
 ...processing 29 of 43
 ...processing 3 of 13
 ...processing 30 of 43
 ...processing 31 of 43
 ...processing 4 of 13
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 ...processing 6 of 13
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 ...processing 7 of 13
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 ...processing 8 of 13
 ...processing 39 of 43
 ...processing 40 of 43
 ...processing 9 of 13
 ...processing 41 of 43
 ...processing 42 of 43
 ...processing 10 of 13
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
 ...processing 0 of 2
 ...processing 1 of 2
total clusters:3 now processing 0
total clusters:3 now processing 0
 ...processing 0 of 35
 ...processing 1 of 35
 ...processing 11 of 13
 ...processing 2 of 35
 ...processing 3 of 35
 ...processing 4 of 35
 ...processing 5 of 35
 ...processing 12 of 13
 ...processing 6 of 35
 ...processing 7 of 35
total clusters:10 now processing 0
 ...processing 0 of 5
 ...processing 1 of 5
 ...processing 8 of 35
 ...processing 2 of 5
 ...processing 9 of 35
 ...processing 3 of 5
 ...processing 10 of 35
 ...processing 4 of 5
 ...processing 11 of 35
total clusters:10 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
 ...processing 12 of 35
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:3 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 13 of 35
 ...processing 2 of 3
total clusters:3 now processing 0
in cluster::shadow_cluster...
...finished clustering.
 ...processing 14 of 35
 ...processing 15 of 35
 ...processing 16 of 35
 ...processing 17 of 35
 ...processing 18 of 35
 ...processing 19 of 35
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 ...processing 27 of 35
 ...processing 28 of 35
 ...processing 29 of 35
 ...processing 30 of 35
 ...processing 31 of 35
 ...processing 32 of 35
 ...processing 33 of 35
 ...processing 34 of 35
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
 ...processing 6 of 20
annotating transcripts
Making transcripts
begin called get_best_alt_splices1
end called get_best_alt_splices1
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
begin called get_best_alt_splices1
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
end called get_best_alt_splices1
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 20
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 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
 ...processing 0 of 12
 ...processing 1 of 12
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 ...processing 3 of 12
 ...processing 4 of 12
 ...processing 5 of 12
 ...processing 6 of 12
 ...processing 7 of 12
 ...processing 8 of 12
 ...processing 9 of 12
 ...processing 10 of 12
 ...processing 11 of 12
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
begin called get_best_alt_splices1
 ...processing 0 of 7
 ...processing 1 of 7
 ...processing 10 of 20
 ...processing 2 of 7
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 ...processing 4 of 7
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 ...processing 6 of 7
end called get_best_alt_splices1
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 14
 ...processing 1 of 14
 ...processing 2 of 14
 ...processing 3 of 14
 ...processing 4 of 14
 ...processing 5 of 14
 ...processing 6 of 14
 ...processing 7 of 14
 ...processing 8 of 14
 ...processing 9 of 14
 ...processing 10 of 14
 ...processing 11 of 14
 ...processing 12 of 14
 ...processing 13 of 14
total clusters:40 now processing 0
 ...processing 0 of 11
 ...processing 1 of 11
 ...processing 2 of 11
 ...processing 3 of 11
 ...processing 4 of 11
 ...processing 5 of 11
 ...processing 6 of 11
 ...processing 7 of 11
 ...processing 8 of 11
 ...processing 9 of 11
 ...processing 10 of 11
total clusters:40 now processing 0
 ...processing 0 of 8
 ...processing 1 of 8
 ...processing 2 of 8
 ...processing 3 of 8
 ...processing 4 of 8
 ...processing 5 of 8
 ...processing 6 of 8
 ...processing 7 of 8
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 13
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 ...processing 3 of 13
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 ...processing 5 of 13
 ...processing 6 of 13
 ...processing 7 of 13
 ...processing 8 of 13
 ...processing 9 of 13
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 ...processing 11 of 13
 ...processing 12 of 13
total clusters:40 now processing 0
 ...processing 0 of 2
 ...processing 1 of 2
total clusters:40 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
begin called get_best_alt_splices1
 ...processing 0 of 14
 ...processing 1 of 14
 ...processing 2 of 14
 ...processing 3 of 14
 ...processing 4 of 14
 ...processing 5 of 14
 ...processing 6 of 14
 ...processing 7 of 14
 ...processing 8 of 14
 ...processing 9 of 14
 ...processing 15 of 20
 ...processing 10 of 14
 ...processing 11 of 14
 ...processing 12 of 14
 ...processing 13 of 14
end called get_best_alt_splices1
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
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 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
 ...processing 0 of 7
 ...processing 1 of 7
 ...processing 2 of 7
 ...processing 3 of 7
 ...processing 4 of 7
 ...processing 5 of 7
 ...processing 6 of 7
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
 ...processing 12 of 20
clustering transcripts into genes for annotations
Processing transcripts into genes
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
 ...processing 0 of 15
 ...processing 1 of 15
 ...processing 2 of 15
 ...processing 3 of 15
 ...processing 4 of 15
 ...processing 5 of 15
 ...processing 6 of 15
 ...processing 7 of 15
 ...processing 8 of 15
 ...processing 9 of 15
 ...processing 10 of 15
 ...processing 11 of 15
 ...processing 12 of 15
 ...processing 13 of 15
 ...processing 14 of 15
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 2 of 13
 ...processing 3 of 13
 ...processing 4 of 13
 ...processing 5 of 13
 ...processing 6 of 13
 ...processing 7 of 13
 ...processing 8 of 13
 ...processing 9 of 13
 ...processing 10 of 13
 ...processing 11 of 13
 ...processing 12 of 13
total clusters:40 now processing 0
 ...processing 0 of 6
 ...processing 1 of 6
 ...processing 2 of 6
 ...processing 3 of 6
 ...processing 4 of 6
 ...processing 5 of 6
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
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 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
 ...processing 0 of 15
 ...processing 1 of 15
 ...processing 2 of 15
 ...processing 3 of 15
 ...processing 4 of 15
 ...processing 5 of 15
 ...processing 6 of 15
 ...processing 7 of 15
 ...processing 8 of 15
 ...processing 9 of 15
 ...processing 10 of 15
 ...processing 11 of 15
 ...processing 12 of 15
 ...processing 13 of 15
 ...processing 14 of 15
total clusters:40 now processing 0
 ...processing 0 of 14
 ...processing 1 of 14
 ...processing 2 of 14
 ...processing 3 of 14
 ...processing 4 of 14
 ...processing 5 of 14
 ...processing 6 of 14
 ...processing 7 of 14
 ...processing 8 of 14
 ...processing 9 of 14
 ...processing 10 of 14
 ...processing 11 of 14
 ...processing 12 of 14
 ...processing 13 of 14
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 17
 ...processing 1 of 17
 ...processing 2 of 17
 ...processing 3 of 17
 ...processing 4 of 17
 ...processing 5 of 17
 ...processing 6 of 17
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 ...processing 9 of 17
 ...processing 10 of 17
 ...processing 11 of 17
 ...processing 12 of 17
 ...processing 13 of 17
 ...processing 14 of 17
 ...processing 15 of 17
 ...processing 16 of 17
total clusters:40 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
adding statistics to annotations
Calculating annotation quality statistics
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:14 now processing 0
total clusters:14 now processing 0
 ...processing 0 of 11
 ...processing 1 of 11
 ...processing 2 of 11
 ...processing 3 of 11
 ...processing 4 of 11
 ...processing 5 of 11
 ...processing 6 of 11
 ...processing 7 of 11
 ...processing 8 of 11
 ...processing 9 of 11
 ...processing 10 of 11
total clusters:14 now processing 0
total clusters:14 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:14 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
choosing best annotation set
Choosing best annotations
 ...processing 9 of 20
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 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:14 now processing 0
total clusters:14 now processing 0
 ...processing 0 of 8
 ...processing 1 of 8
 ...processing 2 of 8
 ...processing 3 of 8
 ...processing 4 of 8
 ...processing 5 of 8
 ...processing 6 of 8
 ...processing 7 of 8
total clusters:14 now processing 0
 ...processing 0 of 13
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 ...processing 8 of 13
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 ...processing 10 of 13
 ...processing 11 of 13
 ...processing 12 of 13
total clusters:14 now processing 0
 ...processing 0 of 2
 ...processing 1 of 2
total clusters:14 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:14 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:14 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
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 ...processing 12 of 20
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
 ...processing 13 of 20
processing chunk output
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:14 now processing 0
 ...processing 0 of 6
 ...processing 1 of 6
 ...processing 2 of 6
 ...processing 3 of 6
 ...processing 4 of 6
 ...processing 5 of 6
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:9 now processing 0
 ...processing 0 of 9
 ...processing 1 of 9
 ...processing 2 of 9
 ...processing 3 of 9
 ...processing 4 of 9
 ...processing 5 of 9
 ...processing 6 of 9
 ...processing 7 of 9
 ...processing 8 of 9
total clusters:9 now processing 0
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 2 of 13
 ...processing 3 of 13
 ...processing 4 of 13
 ...processing 5 of 13
 ...processing 6 of 13
 ...processing 7 of 13
 ...processing 8 of 13
 ...processing 9 of 13
 ...processing 10 of 13
 ...processing 11 of 13
 ...processing 12 of 13
total clusters:9 now processing 0
 ...processing 0 of 6
 ...processing 1 of 6
 ...processing 2 of 6
 ...processing 3 of 6
 ...processing 4 of 6
 ...processing 5 of 6
total clusters:9 now processing 0
 ...processing 0 of 15
 ...processing 1 of 15
 ...processing 2 of 15
 ...processing 3 of 15
 ...processing 4 of 15
 ...processing 5 of 15
 ...processing 6 of 15
 ...processing 7 of 15
 ...processing 8 of 15
 ...processing 9 of 15
 ...processing 10 of 15
 ...processing 11 of 15
 ...processing 12 of 15
 ...processing 13 of 15
 ...processing 14 of 15
total clusters:9 now processing 0
total clusters:9 now processing 0
 ...processing 0 of 17
 ...processing 1 of 17
 ...processing 2 of 17
 ...processing 3 of 17
 ...processing 4 of 17
 ...processing 5 of 17
 ...processing 6 of 17
 ...processing 7 of 17
 ...processing 8 of 17
 ...processing 9 of 17
 ...processing 10 of 17
 ...processing 11 of 17
 ...processing 12 of 17
 ...processing 13 of 17
 ...processing 14 of 17
 ...processing 15 of 17
 ...processing 16 of 17
total clusters:9 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:9 now processing 0
in cluster::shadow_cluster...
...finished clustering.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
annotating transcripts
Making transcripts
begin called get_best_alt_splices1
end called get_best_alt_splices1
begin called get_best_alt_splices1
 ...processing 0 of 12
 ...processing 1 of 12
 ...processing 2 of 12
 ...processing 3 of 12
 ...processing 4 of 12
 ...processing 5 of 12
 ...processing 6 of 12
 ...processing 7 of 12
 ...processing 8 of 12
 ...processing 9 of 12
 ...processing 10 of 12
 ...processing 11 of 12
end called get_best_alt_splices1
begin called get_best_alt_splices1
 ...processing 0 of 16
 ...processing 1 of 16
 ...processing 2 of 16
 ...processing 3 of 16
 ...processing 4 of 16
 ...processing 5 of 16
 ...processing 6 of 16
 ...processing 7 of 16
 ...processing 8 of 16
 ...processing 9 of 16
 ...processing 10 of 16
 ...processing 11 of 16
 ...processing 12 of 16
 ...processing 13 of 16
 ...processing 14 of 16
 ...processing 15 of 16
end called get_best_alt_splices1
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
begin called get_best_alt_splices1
 ...processing 0 of 10
 ...processing 1 of 10
 ...processing 2 of 10
 ...processing 3 of 10
 ...processing 4 of 10
 ...processing 5 of 10
 ...processing 6 of 10
 ...processing 7 of 10
 ...processing 8 of 10
 ...processing 9 of 10
end called get_best_alt_splices1
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
begin called get_best_alt_splices1
 ...processing 0 of 11
 ...processing 1 of 11
 ...processing 2 of 11
 ...processing 3 of 11
 ...processing 4 of 11
 ...processing 5 of 11
 ...processing 6 of 11
 ...processing 7 of 11
 ...processing 8 of 11
 ...processing 9 of 11
 ...processing 10 of 11
end called get_best_alt_splices1
 ...processing 0 of 5
 ...processing 1 of 5
 ...processing 2 of 5
 ...processing 3 of 5
 ...processing 4 of 5
begin called get_best_alt_splices1
 ...processing 0 of 15
 ...processing 1 of 15
 ...processing 2 of 15
 ...processing 3 of 15
 ...processing 4 of 15
 ...processing 5 of 15
 ...processing 6 of 15
 ...processing 7 of 15
 ...processing 8 of 15
 ...processing 9 of 15
 ...processing 10 of 15
 ...processing 11 of 15
 ...processing 12 of 15
 ...processing 13 of 15
 ...processing 14 of 15
end called get_best_alt_splices1
 ...processing 0 of 12
 ...processing 1 of 12
 ...processing 2 of 12
 ...processing 3 of 12
 ...processing 4 of 12
 ...processing 5 of 12
 ...processing 6 of 12
 ...processing 7 of 12
 ...processing 8 of 12
 ...processing 9 of 12
 ...processing 10 of 12
 ...processing 11 of 12
begin called get_best_alt_splices1
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
end called get_best_alt_splices1
 ...processing 0 of 2
 ...processing 1 of 2
begin called get_best_alt_splices1
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 2 of 13
 ...processing 3 of 13
 ...processing 4 of 13
 ...processing 5 of 13
 ...processing 6 of 13
 ...processing 7 of 13
 ...processing 8 of 13
 ...processing 9 of 13
 ...processing 10 of 13
 ...processing 11 of 13
 ...processing 12 of 13
end called get_best_alt_splices1
begin called get_best_alt_splices1
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
end called get_best_alt_splices1
 ...processing 0 of 14
 ...processing 1 of 14
 ...processing 2 of 14
 ...processing 3 of 14
 ...processing 4 of 14
 ...processing 5 of 14
 ...processing 6 of 14
 ...processing 7 of 14
 ...processing 8 of 14
 ...processing 9 of 14
 ...processing 10 of 14
 ...processing 11 of 14
 ...processing 12 of 14
 ...processing 13 of 14
$VAR1 = bless( {
                 'LAlnQ' => 837,
                 '_HAS_STOP' => undef,
                 'translation_end' => 1376,
                 '_length' => 1369,
                 '_f_id' => '0.483',
                 '_sequenceschanged' => 1,
                 '_algorithm' => 'exonerate::protein2genome',
                 'strand' => {
                               'query' => '-1',
                               'hit' => '1'
                             },
                 'evidence' => [
                                 'Q8J0D9.1'
                               ],
                 'queryLength' => 240068,
                 '_HAS_START' => 0,
                 '_hsps' => [
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                535
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    535
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 0
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               1070
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 225339,
                                                                                      '_end' => 225873
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           sub { "DUMMY" }
                                                                                         ],
                                                              '_source_tag' => 'est_gff:StringTie',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 535,
                                       'BITS' => 1070,
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    sub { "DUMMY" }
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                535
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    535
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 0
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               1070
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 1,
                                                                                      '_end' => 535
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'NG-13267_G14_lib199443_5490_1.2753.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'est_gff:StringTie',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'unitig_14|quiver',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 225873,
                                       'SCORE' => 535,
                                       'HIT_SEQ' => 'CTGAGGGTGCCCGTCATGGAGGGGGCGAGGCATCCTGTCGATGCTGTCAGCACATGGACCTTCCCTCTTGCAGCTCGAGGTGCCACTGGCGACCTTGGGTATGGGAGTCCCTAAGGGGAAGGTCAAGATAACGCTTGGGAGAGCATCGTCTGGCCTGACGAAGATAAATACAGGCTCCATGTCCGCTCCGAGAGGGAGATGCAAGGACAGAGCCAACGCGAGTCTAGTAGCTTCGTCCGCGATCGCCCCAAACAACAAGTCCCCGGCTAGTTAACTCACCATGCATCTCCTCACTTGGACCTCGTTCCTGTCCCTCACACTTGCGGCGCCCGTGATCTTGCCCAGGGCCAGCCAGCTCATTCCAGGCCACTACATCGTCAAGCTGAAGGACGGCGCGTCCGAGAGCAGCCTCCAGAACGCCATCAGCCATCTCAACTCGGCGCCGACCAAGCATGTCTACCGCGCAGGCAGCTTCAAGGGCTTCGCGGCCCCGCTGAGCCCGCAGGTGCTAGCGTCGCTTCGCAAGCTCCCCGAG',
                                       'HIT_NAME' => 'NG-13267_G14_lib199443_5490_1.2753.1',
                                       'HIT_LENGTH' => 535,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 0,
                                       'QUERY_START' => 225339,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[0]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 535,
                                       'EVALUE' => 0,
                                       'HSP_LENGTH' => 535,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'CTGAGGGTGCCCGTCATGGAGGGGGCGAGGCATCCTGTCGATGCTGTCAGCACATGGACCTTCCCTCTTGCAGCTCGAGGTGCCACTGGCGACCTTGGGTATGGGAGTCCCTAAGGGGAAGGTCAAGATAACGCTTGGGAGAGCATCGTCTGGCCTGACGAAGATAAATACAGGCTCCATGTCCGCTCCGAGAGGGAGATGCAAGGACAGAGCCAACGCGAGTCTAGTAGCTTCGTCCGCGATCGCCCCAAACAACAAGTCCCCGGCTAGTTAACTCACCATGCATCTCCTCACTTGGACCTCGTTCCTGTCCCTCACACTTGCGGCGCCCGTGATCTTGCCCAGGGCCAGCCAGCTCATTCCAGGCCACTACATCGTCAAGCTGAAGGACGGCGCGTCCGAGAGCAGCCTCCAGAACGCCATCAGCCATCTCAACTCGGCGCCGACCAAGCATGTCTACCGCGCAGGCAGCTTCAAGGGCTTCGCGGCCCCGCTGAGCCCGCAGGTGCTAGCGTCGCTTCGCAAGCTCCCCGAG',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 1,
                                       'HIT_END' => 535,
                                       'QUERY_LENGTH' => 535,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'est_gff:StringTie',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::gff3' ),
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                186
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    186
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 225101,
                                                                                      '_end' => 225286
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 186,
                                       'BITS' => '530',
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    $VAR1->{'_hsps'}[0]{'_root_cleanup_methods'}[1]
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                186
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    186
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 536,
                                                                                      '_end' => 721
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'Q8J0D9.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'Q8J0D9.1',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 225286,
                                       'SCORE' => 186,
                                       'HIT_SEQ' => 'GTCGAGTTCATCGAGCAAGACGCCGTGGTAACCATCAACAGCGTCGTCACTCAGAACAACGTCCCCTGGGGCCTGGCGCGCATTTCGCACCGCCAGGTCAACGCCACGACGTACCTGTACGACTCGAGCGCAGGGACGGGCACCTGCGCCTACATCATCGACACGGGCATCCAAGTGAACCACACC',
                                       'HIT_NAME' => 'Q8J0D9.1',
                                       'HIT_LENGTH' => 186,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 'NA',
                                       'QUERY_START' => 225101,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[1]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 186,
                                       'EVALUE' => 'NA',
                                       'HSP_LENGTH' => 186,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'GTCGAGTTCATCGAGCAAGACGCCGTGGTAACCATCAACAGCGTCGTCACTCAGAACAACGTCCCCTGGGGCCTGGCGCGCATTTCGCACCGCCAGGTCAACGCCACGACGTACCTGTACGACTCGAGCGCAGGGACGGGCACCTGCGCCTACATCATCGACACGGGCATCCAAGTGAACCACACC',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 536,
                                       'HIT_END' => 721,
                                       'QUERY_LENGTH' => 186,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'exonerate::protein2genome',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::protein2genome' ),
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                442
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    442
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 224587,
                                                                                      '_end' => 225028
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 442,
                                       'BITS' => '530',
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    $VAR1->{'_hsps'}[0]{'_root_cleanup_methods'}[1]
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                442
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    442
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 722,
                                                                                      '_end' => 1163
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'Q8J0D9.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'Q8J0D9.1',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 225028,
                                       'SCORE' => 442,
                                       'HIT_SEQ' => 'CAATTCGAAGGCCGGGCCACGTTCCTGGCCAACTTCATCGACAGCACGGATACGGACCTGAACGGGCACGGCACGCACGTGGCCGGCACGACGGGGTCGGCGGCGTACGGCGTGGCCAAGCAGACGCGCCTGTTCGGCGTCAAGGTGCTCGACGCGAGCGGCTCGGGCTCGCTGTCGTCCGTGATCGCGGGCATCGACTTCGTCGCGTCGGACAGCGCCAACCGCACGGCCGCCGGCCAGTGCGCCAACGGCAGCGTCGCCAACATGAGCCTCGGCTCCGGCAGGTCCAGCACGGTCAACGCGGCCGTCGCGTCCGCCGTCGCCAAGGGCGTGTTCTTCGCCGTCGCGGCCGGGAACAGCGACGACGATGCCGCGTTTTACTCGCCCGCGTCCGAGCCGACGGCGTGCACCGTCGGCGCGACGGACTCGTCGGATGCCAGGG',
                                       'HIT_NAME' => 'Q8J0D9.1',
                                       'HIT_LENGTH' => 442,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 'NA',
                                       'QUERY_START' => 224587,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[2]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 442,
                                       'EVALUE' => 'NA',
                                       'HSP_LENGTH' => 442,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'CAATTCGAAGGCCGGGCCACGTTCCTGGCCAACTTCATCGACAGCACGGATACGGACCTGAACGGGCACGGCACGCACGTGGCCGGCACGACGGGGTCGGCGGCGTACGGCGTGGCCAAGCAGACGCGCCTGTTCGGCGTCAAGGTGCTCGACGCGAGCGGCTCGGGCTCGCTGTCGTCCGTGATCGCGGGCATCGACTTCGTCGCGTCGGACAGCGCCAACCGCACGGCCGCCGGCCAGTGCGCCAACGGCAGCGTCGCCAACATGAGCCTCGGCTCCGGCAGGTCCAGCACGGTCAACGCGGCCGTCGCGTCCGCCGTCGCCAAGGGCGTGTTCTTCGCCGTCGCGGCCGGGAACAGCGACGACGATGCCGCGTTTTACTCGCCCGCGTCCGAGCCGACGGCGTGCACCGTCGGCGCGACGGACTCGTCGGATGCCAGGG',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 722,
                                       'HIT_END' => 1163,
                                       'QUERY_LENGTH' => 442,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'exonerate::protein2genome',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::protein2genome' ),
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                83
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    83
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 224383,
                                                                                      '_end' => 224465
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 83,
                                       'BITS' => '530',
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    $VAR1->{'_hsps'}[0]{'_root_cleanup_methods'}[1]
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                83
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    83
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 1164,
                                                                                      '_end' => 1246
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'Q8J0D9.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'Q8J0D9.1',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 224465,
                                       'SCORE' => 83,
                                       'HIT_SEQ' => 'CCTGGTTCTCGAATTACGGCTCCGTCGTCGATGTGTTTGCGCCCGGGGTAGACGTGCTGAGCAGCTGGATCGGGGCGAGCGGG',
                                       'HIT_NAME' => 'Q8J0D9.1',
                                       'HIT_LENGTH' => 83,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 'NA',
                                       'QUERY_START' => 224383,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[3]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 83,
                                       'EVALUE' => 'NA',
                                       'HSP_LENGTH' => 83,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'CCTGGTTCTCGAATTACGGCTCCGTCGTCGATGTGTTTGCGCCCGGGGTAGACGTGCTGAGCAGCTGGATCGGGGCGAGCGGG',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 1164,
                                       'HIT_END' => 1246,
                                       'QUERY_LENGTH' => 83,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'exonerate::protein2genome',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::protein2genome' ),
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                123
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    123
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 224192,
                                                                                      '_end' => 224314
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 123,
                                       'BITS' => '530',
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    $VAR1->{'_hsps'}[0]{'_root_cleanup_methods'}[1]
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                123
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    123
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 1247,
                                                                                      '_end' => 1369
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'Q8J0D9.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'Q8J0D9.1',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 224314,
                                       'SCORE' => 123,
                                       'HIT_SEQ' => 'AACACCATCTCGGGCACCTCGATGGCCACGCCGCATATCACGGGCCTCGGCGCGTACCTGCTGGGCCTGCTGGGCCGCACCACGCCCGCCCAGCTCTGCCAGCACATCAAGGACATCGCCACG',
                                       'HIT_NAME' => 'Q8J0D9.1',
                                       'HIT_LENGTH' => 123,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 'NA',
                                       'QUERY_START' => 224192,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[4]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 123,
                                       'EVALUE' => 'NA',
                                       'HSP_LENGTH' => 123,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'AACACCATCTCGGGCACCTCGATGGCCACGCCGCATATCACGGGCCTCGGCGCGTACCTGCTGGGCCTGCTGGGCCGCACCACGCCCGCCCAGCTCTGCCAGCACATCAAGGACATCGCCACG',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 1247,
                                       'HIT_END' => 1369,
                                       'QUERY_LENGTH' => 123,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'exonerate::protein2genome',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::protein2genome' )
                            ],
                 '_iterator' => 0,
                 '_description' => 'Q8J0D9.1',
                 'LAlnH' => 276,
                 'translation_offset' => 538,
                 '_was_flipped' => 0,
                 '_score' => 1369,
                 '_name' => 'Q8J0D9.1',
                 'database_name' => '/tmp/maker_ODcpaW/1/blastprep/uniprot_sprot%2Eclean.mpi.10.2',
                 '_root_verbose' => 0,
                 'nE' => {
                           'query' => 224192,
                           'hit' => 1369
                         },
                 'nB' => {
                           'query' => 225873,
                           'hit' => 1
                         }
               }, 'Bio::Search::Hit::PhatHit::protein2genome' );
Bio::Search::Hit::PhatHit::protein2genome=HASH(0x7f187ebe8338) 1369 end:1376
-------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
SIGTERM thread
[bnode-05:06156] *** Process received signal ***
[bnode-05:06156] Signal: Segmentation fault (11)
[bnode-05:06156] Signal code:  (0)
[bnode-05:06156] Failing at address: (nil)
[bnode-05:06156] [ 0] /lib64/libc.so.6[0x3282832510]
[bnode-05:06156] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3285095012]
[bnode-05:06156] [ 2] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06156] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3285094ff0]
[bnode-05:06156] [ 4] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06156] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x32828e91b3]
[bnode-05:06156] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x2b3cb7214f56]
[bnode-05:06156] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x2b3cb721a716]
[bnode-05:06156] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x2b3cb729f32d]
[bnode-05:06156] [ 9] /lib64/libpthread.so.0[0x3283407aa1]
[bnode-05:06156] [10] /lib64/libc.so.6(clone+0x6d)[0x32828e8bbd]
[bnode-05:06156] *** End of error message ***
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM thread
SIGTERM received
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM thread
[bnode-05:06153] *** Process received signal ***
[bnode-05:06153] Signal: Segmentation fault (11)
[bnode-05:06153] Signal code:  (0)
[bnode-05:06153] Failing at address: (nil)
[bnode-05:06153] [ 0] /lib64/libc.so.6[0x3282832510]
[bnode-05:06153] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3285095012]
[bnode-05:06153] [ 2] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06153] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3285094ff0]
[bnode-05:06153] [ 4] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06153] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x32828e91b3]
[bnode-05:06153] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x2b472a11cf56]
[bnode-05:06153] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x2b472a122716]
[bnode-05:06153] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x2b472a1a732d]
[bnode-05:06153] [ 9] /lib64/libpthread.so.0[0x3283407aa1]
[bnode-05:06153] [10] /lib64/libc.so.6(clone+0x6d)[0x32828e8bbd]
[bnode-05:06153] *** End of error message ***
SIGTERM received
SIGTERM thread
SIGTERM received
[bnode-05:06151] *** Process received signal ***
[bnode-05:06151] Signal: Segmentation fault (11)
[bnode-05:06151] Signal code:  (0)
[bnode-05:06151] Failing at address: (nil)
[bnode-05:06151] [ 0] /lib64/libc.so.6[0x3282832510]
[bnode-05:06151] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3285095012]
[bnode-05:06151] [ 2] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06151] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3285094ff0]
[bnode-05:06151] [ 4] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06151] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x32828e91b3]
[bnode-05:06151] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x2acab3163f56]
[bnode-05:06151] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x2acab3169716]
[bnode-05:06151] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x2acab31ee32d]
[bnode-05:06151] [ 9] /lib64/libpthread.so.0[0x3283407aa1]
[bnode-05:06151] [10] /lib64/libc.so.6(clone+0x6d)[0x32828e8bbd]
[bnode-05:06151] *** End of error message ***
SIGTERM thread
SIGTERM thread
[bnode-05:06159] *** Process received signal ***
[bnode-05:06159] Signal: Segmentation fault (11)
[bnode-05:06159] Signal code:  (0)
[bnode-05:06159] Failing at address: (nil)
[bnode-05:06159] [ 0] /lib64/libc.so.6[0x3282832510]
[bnode-05:06159] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3285095012]
[bnode-05:06159] [ 2] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06159] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3285094ff0]
[bnode-05:06159] [ 4] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06159] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x32828e91b3]
[bnode-05:06159] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x2b424cc19f56]
[bnode-05:06159] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x2b424cc1f716]
[bnode-05:06159] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x2b424cca432d]
[bnode-05:06159] [ 9] /lib64/libpthread.so.0[0x3283407aa1]
[bnode-05:06159] [10] /lib64/libc.so.6(clone+0x6d)[0x32828e8bbd]
[bnode-05:06159] *** End of error message ***
SIGTERM received
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[bnode-07:25848] *** Process received signal ***
[bnode-07:25848] Signal: Segmentation fault (11)
[bnode-07:25848] Signal code:  (0)
[bnode-07:25848] Failing at address: (nil)
[bnode-07:25848] [ 0] /lib64/libc.so.6[0x3cb2c32510]
[bnode-07:25848] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3cb4895012]
[bnode-07:25848] [ 2] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25848] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3cb4894ff0]
[bnode-07:25848] [ 4] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25848] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x3cb2ce91b3]
[bnode-07:25848] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x7fd88c0e3f56]
[bnode-07:25848] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x7fd88c0e9716]
[bnode-07:25848] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x7fd88c16e32d]
[bnode-07:25848] [ 9] /lib64/libpthread.so.0[0x3cb3807aa1]
[bnode-07:25848] [10] /lib64/libc.so.6(clone+0x6d)[0x3cb2ce8bbd]
[bnode-07:25848] *** End of error message ***
SIGTERM thread
SIGTERM received
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SIGTERM received
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SIGTERM thread
[bnode-07:25858] *** Process received signal ***
[bnode-07:25858] Signal: Segmentation fault (11)
[bnode-07:25858] Signal code:  (0)
[bnode-07:25858] Failing at address: (nil)
[bnode-07:25858] [ 0] /lib64/libc.so.6[0x3cb2c32510]
[bnode-07:25858] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3cb4895012]
[bnode-07:25858] [ 2] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25858] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3cb4894ff0]
[bnode-07:25858] [ 4] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25858] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x3cb2ce91b3]
[bnode-07:25858] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x7fce71331f56]
[bnode-07:25858] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x7fce71337716]
[bnode-07:25858] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x7fce713bc32d]
[bnode-07:25858] [ 9] /lib64/libpthread.so.0[0x3cb3807aa1]
[bnode-07:25858] [10] /lib64/libc.so.6(clone+0x6d)[0x3cb2ce8bbd]
[bnode-07:25858] *** End of error message ***
SIGTERM thread
[bnode-07:25862] *** Process received signal ***
[bnode-07:25862] Signal: Segmentation fault (11)
[bnode-07:25862] Signal code:  (0)
[bnode-07:25862] Failing at address: (nil)
[bnode-07:25862] [ 0] /lib64/libc.so.6[0x3cb2c32510]
[bnode-07:25862] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3cb4895012]
[bnode-07:25862] [ 2] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25862] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3cb4894ff0]
[bnode-07:25862] [ 4] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25862] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x3cb2ce91b3]
[bnode-07:25862] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x7fd831420f56]
[bnode-07:25862] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x7fd831426716]
[bnode-07:25862] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x7fd8314ab32d]
[bnode-07:25862] [ 9] /lib64/libpthread.so.0[0x3cb3807aa1]
[bnode-07:25862] [10] /lib64/libc.so.6(clone+0x6d)[0x3cb2ce8bbd]
[bnode-07:25862] *** End of error message ***
SIGTERM received
SIGTERM thread
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:

  Process name: [[52309,1],18]
  Exit code:    2
--------------------------------------------------------------------------
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From chenjunhui at bgi.com  Wed Dec 13 02:56:46 2017
From: chenjunhui at bgi.com (=?gb2312?B?s8K+/LvUKEp1bmh1aSBDaGVuKQ==?=)
Date: Wed, 13 Dec 2017 09:56:46 +0000
Subject: [maker-devel] =?gb2312?b?UHJvYmxlbSBvZiBtYWtlcqO/?=
Message-ID: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>

Dear Dr?
Gooddays for you.

Recently, we used maker software to annotate our genome. However, we found that some annoted genes utr region was out of the scaffold as following:
sc0000223       maker   five_prime_UTR  101136  101159
sc0000223      0      101142

Would you like to give us some suggetions and help about this problem?
Many thanks for your help and suggestions

Look forward from you.


Best regards
Yours, hui

??? ???????
??????????
???????????????21??????7??518083
?????0755-36307095
??: chenjunhui at genomics.cn<mailto:chenjunhui at genomics.cn>

[??: ??: ??: ??: ??: ??: ??: ??: ??: cid:image003.jpg at 01D20520.996633B0]
________________________________
????
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From carsonhh at gmail.com  Thu Dec 14 09:48:57 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 14 Dec 2017 09:48:57 -0700
Subject: [maker-devel] =?utf-8?q?Problem_of_maker=EF=BC=9F?=
In-Reply-To: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>
References: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>
Message-ID: <B653630D-87AB-46CF-8865-BA68CA3478D8@gmail.com>

Hi Hui,

1. Make sure you are not using a very old version of MAKER. Current stable version is 2.31.9
2. If you are using GFF3 input as part of your run, then the issue may be in the input GFF3 file (MAKER gets the coordinates from the file you give it).
3. Delete and rerun the contig in question. The lines you gave in your example are missing columns, which may have just been a cut and paste mistake, but if not, then it?s an IO error - failure to print full line - which just needs to be rerun (can sometimes happen with slow NFS file systems).
4. Make sure you have current version of BioPerl (current CPAN version and not BioPerl-live).


The only previous occurrence of a start position issue with MAKER ( https://groups.google.com/forum/#!searchin/maker-devel/start$20position%7Csort:date/maker-devel/Yzn6XTm2aas/J2IOGyWXbVMJ ) involved the use of a very old MAKER installation together with bad installation of some prerequisites.


Thanks,
Carson



> On Dec 13, 2017, at 2:56 AM, ???(Junhui Chen) <chenjunhui at bgi.com> wrote:
> 
> Dear Dr?
> Gooddays for you.
>  
> Recently, we used maker software to annotate our genome. However, we found that some annoted genes utr region was out of the scaffold as following:
> sc0000223       maker   five_prime_UTR  101136  101159
> sc0000223      0      101142
>  
> Would you like to give us some suggetions and help about this problem?
> Many thanks for your help and suggestions
>  
> Look forward from you.
>  
>  
> Best regards
> Yours, hui
>  
> ??? ???????
> ?????????? 
> ???????????????21??????7??518083
> ?????0755-36307095
> ??: chenjunhui at genomics.cn <mailto:chenjunhui at genomics.cn>
>  
> <image001.jpg>
> ????
> ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
>  
>  
>  
>  
>  
>  
>  
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>  
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>  
>  
>  
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>  
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>  
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>  
>  
>  
>  
>  
>  
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> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com <mailto:maker-devel at box290.bluehost.com>
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
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From qwzhang0601 at gmail.com  Thu Dec 21 08:06:50 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Thu, 21 Dec 2017 10:06:50 -0500
Subject: [maker-devel] how the maker2 pipeline deal with a Ns sequence
Message-ID: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>

Hello:

I wonder how the maker2 pipeline deals with a 1kb or 100bp NN sequences in
a scafold, especially when such sequences within a gene region?

Recently, we improved a rodent genome. However, at a few certain regions we
filled the gap with both sequences and Ns sequences. We found some
predicted genes in the old assembly lost in our new assembly. By looking
deep into the region, the gene region in the new assembly highly match the
old assembly at both ends of the gene, where covered most predicted coding
sequences (predicted in the old assembly). The only difference is shown in
the middle of the gene with some new sequence and Ns sequences. Attached in
the alignments between sequence in the old and new assembly in the gene
region (Y coordinate shows the new assembly).

Many thanks and Merry Christmas

Best
Quanwei
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From carsonhh at gmail.com  Thu Dec 21 09:49:23 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 21 Dec 2017 09:49:23 -0700
Subject: [maker-devel] how the maker2 pipeline deal with a Ns sequence
In-Reply-To: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>
References: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>
Message-ID: <8A736E44-5D13-408D-A60D-9F843C6D9104@gmail.com>

MAKER doesn?t do anything special for stretches of N?s. They still will be run through each step, just producing empty results in most cases for the region. Programs MAKER uses like BLAST will not align to N?s, so any alignment must either happen around the N?s for short stretches or no result is produced for long stretches (results will be produced in regions where the N?s stop). Also gene predictors will not include N?s in their models, so the N?s will either occur within the intron, or will be skipped over entirely.

?Carson


> On Dec 21, 2017, at 8:06 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I wonder how the maker2 pipeline deals with a 1kb or 100bp NN sequences in a scafold, especially when such sequences within a gene region?
> 
> Recently, we improved a rodent genome. However, at a few certain regions we filled the gap with both sequences and Ns sequences. We found some predicted genes in the old assembly lost in our new assembly. By looking deep into the region, the gene region in the new assembly highly match the old assembly at both ends of the gene, where covered most predicted coding sequences (predicted in the old assembly). The only difference is shown in the middle of the gene with some new sequence and Ns sequences. Attached in the alignments between sequence in the old and new assembly in the gene region (Y coordinate shows the new assembly).
> 
> Many thanks and Merry Christmas
> 
> Best
> Quanwei   
> <hit_matrix.png>_______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




From carsonhh at gmail.com  Fri Dec  1 08:46:30 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 1 Dec 2017 08:46:30 -0700
Subject: [maker-devel] Changing the genetic code table in MAKER
In-Reply-To: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>
References: <CAK_ZpqTC5j-2szaffO5eytS78FxVwgn+cdhKz8mBk8EY7z3_sA@mail.gmail.com>
Message-ID: <C2D92775-EEDA-48A6-920F-5A8E1A2FCF3A@gmail.com>

Sorry. MAKER does not currently support alternate codon tables.

?Carson


> On Nov 30, 2017, at 11:20 PM, Yu-Hsuan Cheng <aircoolsky at gmail.com> wrote:
> 
> Hi,
> 
> This is YuHsuan Cheng, who is a PhD student from Taiwan. I want to use the MAKER combining with SNAP to annotate ciliates genome. The genetic code for ciliates is different from other species, so I am wondering that if there is any option in MAKER I can change the genetic code table? I also asked Dr. Korf about this issue, he said SNAP has no way to change the genetic code table. I will use Augustus combining with Maker later on. 
> The pipeline I used previously is as followed.
> 
> 1. MAKER (Hints from proteome and RNAseq)
> 2. MAKER to Zff  
> 3. ~/bin/maker/exe/snap/hmm-assembler.pl <http://hmm-assembler.pl/> snapFirst . > ../../snapFirst.hmm
> and then used snapFirst.hmm as hints in MAKER
> 
> Look forward to your reply. Thank you.
> 
> Best wishes,
> 
> YuHsuan 
> 
> Yu-Hsuan Cheng ???
> Institute of Molecular Biology
> Academia Sinica
> 128 Academia road, Section 2
> Nankang, Taipei 115
> Taiwan
> Phone:+886-2-2789-9216 <tel:+886%202%202789%209216> (Lab), +886-958-216-538 <tel:+886%20958%20216%20538> (Mobile phone)
> d02b48008 at ntu.edu.tw <mailto:d02b48008 at ntu.edu.tw>_______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From qwzhang0601 at gmail.com  Fri Dec  1 09:56:27 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Fri, 1 Dec 2017 11:56:27 -0500
Subject: [maker-devel] Pseudogene identification
In-Reply-To: <CAOW6FSJ=Bkqezoy1uAt68Gixfmzxy+NVCq=nf_j0ouDfoSpYog@mail.gmail.com>
References: <CAOW6FSKHVYLK1sn5-YUqVk_ucn3iRUqtjkVoAvpQT==NmK8srw@mail.gmail.com>
	<B1CC1942-5D84-48BE-A4B7-2F9B465B9E2C@gmail.com>
	<CAOW6FSJ=Bkqezoy1uAt68Gixfmzxy+NVCq=nf_j0ouDfoSpYog@mail.gmail.com>
Message-ID: <CAOW6FSL9XY8aRiJZTDVaWwO6qTBiVswmnRJ3r7c=cgqYRaskgA@mail.gmail.com>

Dear Carson:

Thanks again for all your previous help. I am still trying to identify
pseudo genes. For me, I have two goals to identify pseudo genes.
(1) Check which predicted protein coding genes are in fact pseudo genes
(especially I want to check genes belong to gene families, which are found
under expansion in our analyzed geome).
(2) Identify pseudo genes in the intergentic regions.
But the link "
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene" only
describe Identification of pseudo genes in the intergentic regions. I
wonder whether I can simple follow the pipeline and run it on the whole
genome, so I can achieve my two goals above. Or do I need to do some
adjustment of the pipeline?

At beginning, I though the pipeline is only useful to identify pseudo genes
in the intergentic regions, but in the following paper, they mentioned the
pipeline was applied to the whole genome. So I think maybe I can also do
this, but not sure whether I can simply run the same pipeline in the
following link on whole genome ("
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene").

In the paper "MAKER-P: A Tool Kit for the Rapid Creation,Management, and
Quality Control of Plant Genome Annotations". It saids "If the analysis
pipeline is applied to the whole genome, 2.5% and 0.6% of currently
annotated proteincoding genes are identified as pseudogenes due to the
presence of misidentified stops and frame shifts, respectively, indicating
that the false-positive rate of our pipeline is 3.1%."

Many thanks for your help.

Best
Quanwei


2017-08-01 9:32 GMT-04:00 Quanwei Zhang <qwzhang0601 at gmail.com>:

> Hi Carson:
>
> I took a look at the description about the pipe line of pseudogene
> identification. In my understanding it will use the annotated (predicted by
> Maker2) protein coding genes as input (i.e., query sequences), search in
> the intergenic spaces (so annotated genes will not be checked) and find the
> regions where show certain level of similarity to the annotated genes.
>
> If my understanding is correct, I think it is not what I want to do get.
> Based on the annotated coding genes from Maker2, we found some genes are
> under expansion in the new species. We want to check and make sure all the
> gene copies in the expanded gene family really function (to make sure they
> are not pseudogenes).
>
> Do you think the pseudogene identification pipe line of Maker2 can be
> helpful for my goal? Or do you have any suggestions on this?
>
> Many thanks
>
> Best
> Quanwei
>
> 2017-07-31 19:54 GMT-04:00 Carson Holt <carsonhh at gmail.com>:
>
>> The MAKER-P fork was merged back into standard MAKER with version 2.29
>> (roughly 3 years ago - a separate download no longer exists). This is
>> because MAKER-P?s functionality is almost entirely in accessory scripts and
>> written protocols. The ?/maker/bin/maker called by both MAKER2 and MAKER-P
>> is actually the same script. So no need to rerun, because if you are using
>> version 2.29 or later, you already ran it.
>>
>> Pseudogene calling is therefore handled by accessory scripts and
>> protocols you can find here ?> http://shiulab.plantbiology
>> .msu.edu/wiki/index.php/Protocol:Pseudogene
>>
>> The other MAKER-P protocols can be found here ?>
>> http://www.yandell-lab.org/software/maker-p.html
>>
>> --Carson
>>
>>
>>
>> On Jul 31, 2017, at 5:02 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>
>> Hello:
>>
>> We used Maker2 to annotate a new rodent genome. By using the annotated
>> genes we did gene family expansion analysis, and found several gene
>> families under expansion in the new rodent genome. But we want to check
>> whether some annotated genes are Pseudogenes, which lead to the expansion.
>> Do you have any suggestions on this?
>>
>> We found the Maker-P can annotate Pseudogene, but we are not sure whether
>> it is worth to repeat our annotation with Maker-P. Besides, we are not sure
>> whether the default parameters of Maker-P are good for a rodent species.
>> What's more, in my understanding the Maker-P will identify Pseudogenes in
>> the intergenic spaces (which I think the annotated coding genes will be not
>> be tested and checked).
>>
>> Do you have any suggestions to solve our problem? We do not want to
>> identify Pseudogene on the genome wide, but only want to check those genes
>> showing expansion (to make sure all those gene copies really function).
>>
>> Many thanks
>>
>> Best
>> Quanwei
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>>
>
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From patrick.tranvan at unil.ch  Fri Dec  1 13:27:09 2017
From: patrick.tranvan at unil.ch (Patrick Tran Van)
Date: Fri, 1 Dec 2017 20:27:09 +0000
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
Message-ID: <1512160093637.44052@unil.ch>

Hi,


>From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).


So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?

Because I have way more gene with keep_pred=1.


Maybe I missed something.


Thanks.


Patrick
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From carsonhh at gmail.com  Fri Dec  1 14:11:51 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 1 Dec 2017 14:11:51 -0700
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <1512160093637.44052@unil.ch>
References: <1512160093637.44052@unil.ch>
Message-ID: <CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>

keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what?s left to the final gene models. It?s basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.

?Carson


> On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch> wrote:
> 
> Hi,
> 
> From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).
> 
> So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
> Because I have way more gene with keep_pred=1. 
> 
> Maybe I missed something.
> 
> Thanks.
> 
> Patrick 

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From patrick.tranvan at unil.ch  Sun Dec  3 03:08:21 2017
From: patrick.tranvan at unil.ch (Patrick Tran Van)
Date: Sun, 3 Dec 2017 10:08:21 +0000
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
References: <1512160093637.44052@unil.ch>,
	<CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
Message-ID: <1512295765377.75322@unil.ch>

Ok for keep_preds but AED=1 means no support at all or (very) bad support ?


Patrick Tran Van

Groups Chapuisat, Robinson-Rechavi & Schwander
Department of Ecology and Evolution
University of Lausanne
Le Biophore
CH-1015 Lausanne
Switzerland
Office 3206
________________________________
From: Carson Holt <carsonhh at gmail.com>
Sent: Friday, December 1, 2017 10:11 PM
To: Patrick Tran Van
Cc: maker-devel at yandell-lab.org
Subject: Re: Difference between AED=1 and keep_preds=1

keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what's left to the final gene models. It's basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.

-Carson


On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch<mailto:patrick.tranvan at unil.ch>> wrote:

Hi,

>From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).

So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
Because I have way more gene with keep_pred=1.

Maybe I missed something.

Thanks.

Patrick

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From carsonhh at gmail.com  Sun Dec  3 14:09:22 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 3 Dec 2017 14:09:22 -0700
Subject: [maker-devel] Difference between AED=1 and keep_preds=1
In-Reply-To: <1512295765377.75322@unil.ch>
References: <1512160093637.44052@unil.ch>
	<CB25D095-777B-4BAE-BA80-7119FBFA6175@gmail.com>
	<1512295765377.75322@unil.ch>
Message-ID: <57EE5EF4-E7B1-4DF3-B4CA-B12531AD93A1@gmail.com>

It means no support at all.

?Carson



> On Dec 3, 2017, at 3:08 AM, Patrick Tran Van <patrick.tranvan at unil.ch> wrote:
> 
> Ok for keep_preds but AED=1 means no support at all or (very) bad support ?
> 
> Patrick Tran Van
> 
> Groups Chapuisat, Robinson-Rechavi & Schwander
> Department of Ecology and Evolution
> University of Lausanne
> Le Biophore
> CH-1015 Lausanne
> Switzerland
> Office 3206
> From: Carson Holt <carsonhh at gmail.com <mailto:carsonhh at gmail.com>>
> Sent: Friday, December 1, 2017 10:11 PM
> To: Patrick Tran Van
> Cc: maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>
> Subject: Re: Difference between AED=1 and keep_preds=1
>  
> keep_preds=1 will take all the raw predictions remove any that overlap the current supported gene set, then filter for redundancy (i.e. if you ran both SNAP and Augustus), then add what?s left to the final gene models. It?s basically the equivalent of taking all the models in the non-overlapping.abiinit file in a normal MAKER run and adding them to the final models.
> 
> ?Carson
> 
> 
>> On Dec 1, 2017, at 1:27 PM, Patrick Tran Van <patrick.tranvan at unil.ch <mailto:patrick.tranvan at unil.ch>> wrote:
>> 
>> Hi,
>> 
>> From what I understand, an AED of 1 means that the gene predicted by gene finder is not supported by external evidence (transcriptome and protein).
>> 
>> So how is it different with keep_preds=1, which is describe as "add unsupported gene prediction" ?
>> Because I have way more gene with keep_pred=1. 
>> 
>> Maybe I missed something.
>> 
>> Thanks.
>> 
>> Patrick 
> 
> 

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From scott at scottcain.net  Thu Dec  7 08:53:16 2017
From: scott at scottcain.net (Scott Cain)
Date: Thu, 7 Dec 2017 10:53:16 -0500
Subject: [maker-devel] MAKER run error
In-Reply-To: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
References: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
Message-ID: <CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>

Hi Guinara,

I don't know (though my guess would be that you're running out of memory).
I'm cc'ing the MAKER developer's mailing list to see if anybody on that
list knows.

Scott


On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <tagirdzh at ualberta.ca>
wrote:

> Hello,
>
> I got this error running maker on mac:
>
> STATUS: Parsing control files...
> STATUS: Processing and indexing input FASTA files...
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> Filesize limit exceeded: 25
>
> Is there anything that could solve it?
>
> Thank you,
> Gulnara
>
>
>


-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research
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From carsonhh at gmail.com  Thu Dec  7 09:00:29 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 09:00:29 -0700
Subject: [maker-devel] MAKER run error
In-Reply-To: <CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>
References: <CAKHNdhdVY7CdRZRtp3pZ+9ewAMAWRSXO8StnWN=GxLexKUVv9A@mail.gmail.com>
	<CA+JTaozPdrBSPNdcGtFjbc==5obuQuoJhBo2Zx-vJE6Hj0w+hQ@mail.gmail.com>
Message-ID: <7DAB19A4-573C-4E9E-A208-7352228A502B@gmail.com>

The FASTA file gets indexed by BioPerl using BerkleyDB. I?m guessing there is something odd about your input file and the database has run out of HASHes for indexing. You can google if there is a setting you can configure in BerkleyDB on Mac. But I suspect you are doing something like giving the raw reads from an mRNA-seq experiment or DNA sequencing to MAKER (resulting in billions of entrires to be indexed), which would be incorrect. MAKER can?t handle raw data. You must first assemble it using using like Trinity for example for mRNA.

Thanks,
Carson

> On Dec 7, 2017, at 8:53 AM, Scott Cain <scott at scottcain.net> wrote:
> 
> Hi Guinara,
> 
> I don't know (though my guess would be that you're running out of memory).  I'm cc'ing the MAKER developer's mailing list to see if anybody on that list knows.
> 
> Scott
> 
> 
> On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <tagirdzh at ualberta.ca <mailto:tagirdzh at ualberta.ca>> wrote:
> Hello,
> 
> I got this error running maker on mac:
> 
> STATUS: Parsing control files...
> STATUS: Processing and indexing input FASTA files...
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> HASH: Out of overflow pages. Increase page size
> Filesize limit exceeded: 25
> 
> Is there anything that could solve it?
> 
> Thank you,
> Gulnara
> 
> 
> 
> 
> 
> -- 
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/ <http://gmod.org/>)                     216-392-3087
> Ontario Institute for Cancer Research
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From jeanne.wilbrandt at web.de  Thu Dec  7 09:13:05 2017
From: jeanne.wilbrandt at web.de (Jeanne Web)
Date: Thu, 7 Dec 2017 17:13:05 +0100
Subject: [maker-devel] [Maker] Gene density threshold?
Message-ID: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>

Dear MAKER developers,

I have wondered whether there is an internal threshold or cutoff value 
for gene density (allowing only x genes in a genomic region of a certain 
size) or gene overlap (requiring to be predictions x bases apart from 
each other)?

We have come to this idea when re-annotating a genome with another gene 
predictor. Several cases of single-exon genes not predicted by MAKER but 
flanked (i.e. close proximity) by MAKER-predictions were observed.

Thus, I'd like to ask: Which factors (apart from sequence/signals and 
evidence/AED) influence the algorithmic prediction decision?

Any help is highly appreciated.
With best wishes
Jeanne Wilbrandt


~~~
Jeanne Wilbrandt, M.sc.
ORCID 0000-0002-0363-3837
~~~
PhD candidate
Leibniz PhD representative, student representative
Leibniz Graduate School on Genomic Biodiversity Research
ZFMK ~ zmb ~ University of Bonn





From carsonhh at gmail.com  Thu Dec  7 09:28:01 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 09:28:01 -0700
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
Message-ID: <EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>

There is no gene density parameter, and for gene overlap there is no distance parameter. Gene overlap on the same strand is not permitted though. If a gene is being excluded because of UTR overlap, you can someone correct for that by setting correct_est_fusion=1. That will trim back the UTR on those cases since this type of exclusion is often caused by false merging of neighboring transcripts during mRNA-seq assembly. Some organisms like fungi do truly have UTR overlap observed some genes, but mRNA-seq reads will assemble into a single transcript, so it?s hard to tease apart. Trimming back the UTR in those cases tends to be the most reliable solution.

?Carson


> On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de> wrote:
> 
> Dear MAKER developers,
> 
> I have wondered whether there is an internal threshold or cutoff value for gene density (allowing only x genes in a genomic region of a certain size) or gene overlap (requiring to be predictions x bases apart from each other)?
> 
> We have come to this idea when re-annotating a genome with another gene predictor. Several cases of single-exon genes not predicted by MAKER but flanked (i.e. close proximity) by MAKER-predictions were observed.
> 
> Thus, I'd like to ask: Which factors (apart from sequence/signals and evidence/AED) influence the algorithmic prediction decision?
> 
> Any help is highly appreciated.
> With best wishes
> Jeanne Wilbrandt
> 
> 
> ~~~
> Jeanne Wilbrandt, M.sc.
> ORCID 0000-0002-0363-3837
> ~~~
> PhD candidate
> Leibniz PhD representative, student representative
> Leibniz Graduate School on Genomic Biodiversity Research
> ZFMK ~ zmb ~ University of Bonn
> 
> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




From qwzhang0601 at gmail.com  Thu Dec  7 14:44:03 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Thu, 7 Dec 2017 16:44:03 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
Message-ID: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>

Hello:

I am trying to identify pseudo genes following
http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene

After I get the blast result, I am trying to scan pseudogenes by the
command "python pseudo_wrap.py parameter". But I got the following errors.
Do you have any ideas and suggestions about the errors? Thanks.

##below shows reported errors
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 4330, in <module>
    parse.get_qualified4(blast,fasta,E,I,L,P,Q)
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 3050, in get_qualified4
    N = sizes[L[0]]
KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
line 98, in <module>
    oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
IndexError: list index out of range
Done!

Best
Quanwei
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From xvazquezc at gmail.com  Thu Dec  7 16:34:54 2017
From: xvazquezc at gmail.com (=?UTF-8?Q?Xabier_V=C3=A1zquez=2DCampos?=)
Date: Fri, 8 Dec 2017 10:34:54 +1100
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
	<EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
Message-ID: <CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>

Using the --jaccard_clip option in Trinity, also helps to reduce the
merging of very close genes when assembling RNAseq. A must for fungi and
other gene-dense genomes.
It increases the assembly time of RNAseq quite a lot but it is worth it.

On 8 December 2017 at 03:28, Carson Holt <carsonhh at gmail.com> wrote:

> There is no gene density parameter, and for gene overlap there is no
> distance parameter. Gene overlap on the same strand is not permitted
> though. If a gene is being excluded because of UTR overlap, you can someone
> correct for that by setting correct_est_fusion=1. That will trim back the
> UTR on those cases since this type of exclusion is often caused by false
> merging of neighboring transcripts during mRNA-seq assembly. Some organisms
> like fungi do truly have UTR overlap observed some genes, but mRNA-seq
> reads will assemble into a single transcript, so it?s hard to tease apart.
> Trimming back the UTR in those cases tends to be the most reliable solution.
>
> ?Carson
>
>
> > On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de> wrote:
> >
> > Dear MAKER developers,
> >
> > I have wondered whether there is an internal threshold or cutoff value
> for gene density (allowing only x genes in a genomic region of a certain
> size) or gene overlap (requiring to be predictions x bases apart from each
> other)?
> >
> > We have come to this idea when re-annotating a genome with another gene
> predictor. Several cases of single-exon genes not predicted by MAKER but
> flanked (i.e. close proximity) by MAKER-predictions were observed.
> >
> > Thus, I'd like to ask: Which factors (apart from sequence/signals and
> evidence/AED) influence the algorithmic prediction decision?
> >
> > Any help is highly appreciated.
> > With best wishes
> > Jeanne Wilbrandt
> >
> >
> > ~~~
> > Jeanne Wilbrandt, M.sc.
> > ORCID 0000-0002-0363-3837
> > ~~~
> > PhD candidate
> > Leibniz PhD representative, student representative
> > Leibniz Graduate School on Genomic Biodiversity Research
> > ZFMK ~ zmb ~ University of Bonn
> >
> >
> >
> > _______________________________________________
> > maker-devel mailing list
> > maker-devel at box290.bluehost.com
> > http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
Xabier V?zquez-Campos, *PhD*
*Research Associate*
NSW Systems Biology Initiative
School of Biotechnology and Biomolecular Sciences
The University of New South Wales
Sydney NSW 2052 AUSTRALIA
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From carsonhh at gmail.com  Thu Dec  7 21:42:29 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 7 Dec 2017 21:42:29 -0700
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
Message-ID: <2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>

I?m going to CC Michael Campbell on this. I wasn?t really involved with any of the pseudogene accessory scripts and protocols that went with the MAKER-P publication nor have I really been involved with pseudogene annotation in general. So Michael might have more insight here.

?Carson

> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I am trying to identify pseudo genes following http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
> 
> After I get the blast result, I am trying to scan pseudogenes by the command "python pseudo_wrap.py parameter". But I got the following errors. Do you have any ideas and suggestions about the errors? Thanks.
> 
> ##below shows reported errors
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py", line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
> 
> Best
> Quanwei
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From qwzhang0601 at gmail.com  Fri Dec  8 06:46:05 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Fri, 8 Dec 2017 08:46:05 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
Message-ID: <CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>

Thank you Carson and Michael.

Best
Quanwei

2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:

> I?m going to CC Michael Campbell on this. I wasn?t really involved with
> any of the pseudogene accessory scripts and protocols that went with the
> MAKER-P publication nor have I really been involved with pseudogene
> annotation in general. So Michael might have more insight here.
>
> ?Carson
>
> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>
> Hello:
>
> I am trying to identify pseudo genes following
> http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>
> After I get the blast result, I am trying to scan pseudogenes by the
> command "python pseudo_wrap.py parameter". But I got the following errors.
> Do you have any ideas and suggestions about the errors? Thanks.
>
> ##below shows reported errors
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
> line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
>
> Best
> Quanwei
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>
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From jeanne.wilbrandt at web.de  Fri Dec  8 08:26:21 2017
From: jeanne.wilbrandt at web.de (Jeanne Web)
Date: Fri, 8 Dec 2017 16:26:21 +0100
Subject: [maker-devel] [Maker] Gene density threshold?
In-Reply-To: <CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>
References: <5d907339-3310-7b0f-bd51-910039ec0b2b@web.de>
	<EFD0E404-DE7A-4AF3-BE15-CB0727D37DCB@gmail.com>
	<CAL0hg4GUXGsTcFWz6ba4gNNWAhPMumN_fCsaGJHo9wWpNkroLg@mail.gmail.com>
Message-ID: <60a78a42-d09d-09ce-93e2-1fad94119ea4@web.de>


Thank you very much for the clarifications, Carson and Xabier!



On 12/08/2017 12:34 AM, Xabier V?zquez-Campos wrote:
> Using the --jaccard_clip option in Trinity, also helps to reduce the 
> merging of very close genes when assembling RNAseq. A must for fungi and 
> other gene-dense genomes.
> It increases the assembly time of RNAseq quite a lot but it is worth it.
> 
> On 8 December 2017 at 03:28, Carson Holt <carsonhh at gmail.com 
> <mailto:carsonhh at gmail.com>> wrote:
> 
>     There is no gene density parameter, and for gene overlap there is no
>     distance parameter. Gene overlap on the same strand is not permitted
>     though. If a gene is being excluded because of UTR overlap, you can
>     someone correct for that by setting correct_est_fusion=1. That will
>     trim back the UTR on those cases since this type of exclusion is
>     often caused by false merging of neighboring transcripts during
>     mRNA-seq assembly. Some organisms like fungi do truly have UTR
>     overlap observed some genes, but mRNA-seq reads will assemble into a
>     single transcript, so it?s hard to tease apart. Trimming back the
>     UTR in those cases tends to be the most reliable solution.
> 
>     ?Carson
> 
> 
>      > On Dec 7, 2017, at 9:13 AM, Jeanne Web <jeanne.wilbrandt at web.de
>     <mailto:jeanne.wilbrandt at web.de>> wrote:
>      >
>      > Dear MAKER developers,
>      >
>      > I have wondered whether there is an internal threshold or cutoff
>     value for gene density (allowing only x genes in a genomic region of
>     a certain size) or gene overlap (requiring to be predictions x bases
>     apart from each other)?
>      >
>      > We have come to this idea when re-annotating a genome with
>     another gene predictor. Several cases of single-exon genes not
>     predicted by MAKER but flanked (i.e. close proximity) by
>     MAKER-predictions were observed.
>      >
>      > Thus, I'd like to ask: Which factors (apart from sequence/signals
>     and evidence/AED) influence the algorithmic prediction decision?
>      >
>      > Any help is highly appreciated.
>      > With best wishes
>      > Jeanne Wilbrandt
>      >
>      >
>      > ~~~
>      > Jeanne Wilbrandt, M.sc.
>      > ORCID 0000-0002-0363-3837
>      > ~~~
>      > PhD candidate
>      > Leibniz PhD representative, student representative
>      > Leibniz Graduate School on Genomic Biodiversity Research
>      > ZFMK ~ zmb ~ University of Bonn
>      >
>      >
>      >
>      > _______________________________________________
>      > maker-devel mailing list
>      > maker-devel at box290.bluehost.com
>     <mailto:maker-devel at box290.bluehost.com>
>      >
>     http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>     <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
> 
> 
>     _______________________________________________
>     maker-devel mailing list
>     maker-devel at box290.bluehost.com <mailto:maker-devel at box290.bluehost.com>
>     http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>     <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
> 
> 
> 
> 
> -- 
> Xabier V?zquez-Campos, /PhD/
> /Research Associate/
> NSW Systems Biology Initiative
> School of Biotechnology and Biomolecular Sciences
> The University of New South Wales
> Sydney NSW 2052 AUSTRALIA




From michael.s.campbell1 at gmail.com  Sun Dec 10 18:37:20 2017
From: michael.s.campbell1 at gmail.com (Michael Campbell)
Date: Sun, 10 Dec 2017 20:37:20 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
Message-ID: <13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>

Hi Quanwei,

My guess would be a file format issue, but the code has evolved since I worked with it. The last time that ran it the fasta header had to contain only the sequence ID without a space after it. That was the big gotcha that I remember.

I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.

Thanks,
Mike

> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Thank you Carson and Michael.
> 
> Best
> Quanwei
> 
> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:
>> I?m going to CC Michael Campbell on this. I wasn?t really involved with any of the pseudogene accessory scripts and protocols that went with the MAKER-P publication nor have I really been involved with pseudogene annotation in general. So Michael might have more insight here.
>> 
>> ?Carson
>> 
>>> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>> 
>>> Hello:
>>> 
>>> I am trying to identify pseudo genes following http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>> 
>>> After I get the blast result, I am trying to scan pseudogenes by the command "python pseudo_wrap.py parameter". But I got the following errors. Do you have any ideas and suggestions about the errors? Thanks.
>>> 
>>> ##below shows reported errors
>>> Traceback (most recent call last):
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 4330, in <module>
>>>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py", line 3050, in get_qualified4
>>>     N = sizes[L[0]]
>>> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>> Traceback (most recent call last):
>>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py", line 98, in <module>
>>>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>> IndexError: list index out of range
>>> Done!
>>> 
>>> Best
>>> Quanwei
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
> 
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From qwzhang0601 at gmail.com  Mon Dec 11 07:55:42 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 09:55:42 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
Message-ID: <CAOW6FSL+2m-PB5tZQSHmBjbvbMm8QjsHpnNQYGGtd8w73uqw-A@mail.gmail.com>

Hello Shinhan and Michael:

Thanks for your help. The sequence is shown below, which is reported
protein sequence by Maker2. The error occur when I run "pseudo_wrap.py".
With the blast results and predicted protein sequences by Maker2, I am
trying to predict the pseudo genes in the whole assembly (both for those in
the intergenic regions and those among the predicted proteins).

>maker-Contig2656-snap-gene-1.9-mRNA-1 protein AED:0.04 eAED:0.04
QI:43|1|1|1|0.85|0.87|8|1768|297
MGTSLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGMSLTMEGTVNLQLSAKSVGVFE
AFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHVKGNKVLYETYHGVFVNIQYVL
RCDMRRSLLAKDLTKTCEFIVHSVPQKGKLTPSPVDFTITPETLQNVKERALLPKFLIRG
HLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNIQIADG
DVCRSLSVPIYMVFPRLFTCPTLETTNFKVEFEINVVVLLHADHLITENFPLKLCRT


#below is the blast results
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    51
0    0    220    270    424151    424303    3.23e-25    111
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    93.103    58    4
0    170    227    423367    423540    4.19e-24    108
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    85.000    60    7
1    66    123    404001    404180    5.67e-24    107
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    48
0    0    20    67    402613    402756    3.47e-20    96.7
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    50.725    69
25    1    238    297    426022    426228    6.48e-09    63.2
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    67.308    52
15    2    118    168    417125    417277    2.07e-08    61.6
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    100.000    25
0    0    145    169    419825    419899    5.54e-06    53.9
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2656    76.667    30    5
1    1    30    382922    383005    0.012    43.5
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig3808    22.545    275
175    9    15    283    112218    111490    1.13e-07    59.3
maker-Contig2656-snap-gene-1.9-mRNA-1    Contig2791    26.667    60
43    1    236    295    20108374    20108550    9.6    34.3


Many thanks

Best
Quanwei

2017-12-11 8:13 GMT-05:00 Shin-Han Shiu <shius at msu.edu>:

> Hi Mike and Carson, we will take over from here. Thanks for referring the
> message to us.
>
> Quanwei, it looks like for some reason your input sequence file is missing
> "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue with the
> sequence name since the code use space as delimiter in places. Can you
> check your sequence file for this sequence and let us know how the name
> after ">" look like?
>
> Nick, sorry for bugging you. Do you have any input on this?
>
> Shinhan
>
> On 12/10/2017 8:37 PM, Michael Campbell wrote:
>
> Hi Quanwei,
>
> My guess would be a file format issue, but the code has evolved since I
> worked with it. The last time that ran it the fasta header had to contain
> only the sequence ID without a space after it. That was the big gotcha that
> I remember.
>
> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>
> Thanks,
> Mike
>
> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>
> Thank you Carson and Michael.
>
> Best
> Quanwei
>
> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com>:
>
>> I?m going to CC Michael Campbell on this. I wasn?t really involved with
>> any of the pseudogene accessory scripts and protocols that went with the
>> MAKER-P publication nor have I really been involved with pseudogene
>> annotation in general. So Michael might have more insight here.
>>
>> ?Carson
>>
>> On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
>>
>> Hello:
>>
>> I am trying to identify pseudo genes following
>> http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>
>> After I get the blast result, I am trying to scan pseudogenes by the
>> command "python pseudo_wrap.py parameter". But I got the following errors.
>> Do you have any ideas and suggestions about the errors? Thanks.
>>
>> ##below shows reported errors
>> Traceback (most recent call last):
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>> line 4330, in <module>
>>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>> line 3050, in get_qualified4
>>     N = sizes[L[0]]
>> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>> Traceback (most recent call last):
>>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>> line 98, in <module>
>>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>> IndexError: list index out of range
>> Done!
>>
>> Best
>> Quanwei
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>
>>
>>
>
> --
> --------------------------------------
> Shin-Han Shiu
> Michigan State University
> Department of Plant Biology
> 2265 Mol Plant Sci Bldg
> (TEL) +1-517-353-7196 <(517)%20353-7196>http://goo.gl/keiHZX <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMDaQ&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=2co1_3xFiHR-sHwprAR0Wh1nMeSutUJ7n-TAibVN28c&s=Mt70of3YH2ihTytQ-XPiKJS0rOpA_YAxJEuEyLFK1BQ&e=>
> --------------------------------------
>
>
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From qwzhang0601 at gmail.com  Mon Dec 11 08:18:02 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 10:18:02 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <20171211100137.89911puy7wxi9scx@mail.msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
	<20171211100137.89911puy7wxi9scx@mail.msu.edu>
Message-ID: <CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>

Thank you Nick. The output is shown below.

Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 4330, in <module>
    parse.get_qualified4(blast,fasta,E,I,L,P,Q)
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
line 3050, in get_qualified4
    N = sizes[L[0]]
KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
Traceback (most recent call last):
  File
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
line 98, in <module>
    oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
IndexError: list index out of range
Done!

NOTE: DatabaseOp not imported
Program  : tfasty34
Pair list: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
Fasta1   : ../../prediction2_final.proteins.fasta
Fasta2   : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
Fasta dir: /gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin/
Working d:
Flags    : -A -m 3 -q
E thres  : 1.0
Read gene pairs...
 0 pairs
Read fasta files...
Do sw...
Done!
Read BLOSUM50 matrix...
Read the sw.out file...
Compare sequences:
 total: 0 alignments
Done!
Check parameter file...
 default: ml_t=30
 default: ev_t=5
 default: ml_p=0.05
 default: id_t=40
Filter ../maker2.blastn.m...
 E:5 I:40 L:30 P:0.05
Get pseudoexons...
 pseudoexon file: ../maker2.blastn.m_parsed_G500.PE
Get phase 1 pseudogene...
 phase1 ps file: ../maker2.blastn.m_parsed_G500.PE_I500.PS1
Get pair file and subject coordinates...
 pair file  : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
 coordinates: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord
Get phase 1 pseudogene sequences...
 phase 1 ps sequence:
../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
Find stop and framshifts...
 Smith-Waterman outputs:
../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.*
 Final output:
../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.out.disable_count

The pseudogene pipeline has finished!


Best
Quanwei

2017-12-11 10:01 GMT-05:00 <panchyni at msu.edu>:

> Quanwei, in addition to checking the sequence file, can you also send
> me the standard output of the run (this the text that normally prints
> to the terminal unless you pipe it somewhere else)? This would help
> in diagnosing the problem, but Shin-Han is likely correct that it is an
> issue in the name formatting.
>
> Nick
>
> Quoting Shin-Han Shiu <shius at msu.edu>:
>
> > Hi Mike and Carson, we will take over from here. Thanks for referring
> > the message to us.
> >
> > Quanwei, it looks like for some reason your input sequence file is
> > missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue
> > with the sequence name since the code use space as delimiter in
> > places. Can you check your sequence file for this sequence and let us
> > know how the name after ">" look like?
> >
> > Nick, sorry for bugging you. Do you have any input on this?
> >
> > Shinhan
> >
> >
> > On 12/10/2017 8:37 PM, Michael Campbell wrote:
> >> Hi Quanwei,
> >>
> >> My guess would be a file format issue, but the code has evolved
> >> since I worked with it. The last time that ran it the fasta header
> >> had to contain only the sequence ID without a space after it. That
> >> was the big gotcha that I remember.
> >>
> >> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his
> lab.
> >>
> >> Thanks,
> >> Mike
> >>
> >> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com
> >> <mailto:qwzhang0601 at gmail.com>> wrote:
> >>
> >>> Thank you Carson and Michael.
> >>>
> >>> Best
> >>> Quanwei
> >>>
> >>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com
> >>> <mailto:carsonhh at gmail.com>>:
> >>>
> >>>    I?m going to CC Michael Campbell on this. I wasn?t really
> >>>    involved with any of the pseudogene accessory scripts and
> >>>    protocols that went with the MAKER-P publication nor have I
> >>>    really been involved with pseudogene annotation in general. So
> >>>    Michael might have more insight here.
> >>>
> >>>    ?Carson
> >>>
> >>>>    On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
> >>>>    <mailto:qwzhang0601 at gmail.com>> wrote:
> >>>>
> >>>>    Hello:
> >>>>
> >>>>    I am trying to identify pseudo genes following
> >>>>    http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
> >>>>    <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
> >
> >>>>
> >>>>    After I get the blast result, I am trying to scan pseudogenes by
> >>>>    the command "python pseudo_wrap.py parameter". But I got the
> >>>>    following errors. Do you have any ideas and suggestions about
> >>>>    the errors? Thanks.
> >>>>
> >>>>    ##below shows reported errors
> >>>>    Traceback (most recent call last):
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
> ParseBlast.py",
> >>>>    line 4330, in <module>
> >>>>        parse.get_qualified4(blast,fasta,E,I,L,P,Q)
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
> ParseBlast.py",
> >>>>    line 3050, in get_qualified4
> >>>>        N = sizes[L[0]]
> >>>>    KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> >>>>    Traceback (most recent call last):
> >>>>      File
> >>>>
> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/
> script_step3b.py",
> >>>>    line 98, in <module>
> >>>>        oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> >>>>    IndexError: list index out of range
> >>>>    Done!
> >>>>
> >>>>    Best
> >>>>    Quanwei
> >>>>    _______________________________________________
> >>>>    maker-devel mailing list
> >>>>    maker-devel at box290.bluehost.com
> >>>>    <mailto:maker-devel at box290.bluehost.com>
> >>>>    http://box290.bluehost.com/mailman/listinfo/maker-devel_
> yandell-lab.org
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=SeSN1OfBVQVhi5forovCTfSJGCO1bR7Q7LuCcWlhctI&e=>
> >>>>
> >>>> <https://urldefense.proofpoint.com/v2/url?u=http-
> 3A__box290.bluehost.com_mailman_listinfo_maker-
> 2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=
> rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=
> 2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
> >>>
> >>>
> >
> > --
> > --------------------------------------
> > Shin-Han Shiu
> > Michigan State University
> > Department of Plant Biology
> > 2265 Mol Plant Sci Bldg
> > (TEL) +1-517-353-7196 <(517)%20353-7196>
> > http://goo.gl/keiHZX
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=pk3W0L_Z0dlNJDAdwrb7dA0_NSdr21LVNthDV6V43qg&e=>
> > --------------------------------------
> >
> >
>
>
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From qwzhang0601 at gmail.com  Mon Dec 11 09:47:30 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Mon, 11 Dec 2017 11:47:30 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
	<20171211100137.89911puy7wxi9scx@mail.msu.edu>
	<CAOW6FSJQ0c3iZJ-YQ8JYW5T164Hz+EfPBPRV4NrDasR98mYWzA@mail.gmail.com>
Message-ID: <CAOW6FS+dm9npUVLMPi6VTDvFH_ZncrvN9A=V9BWRW1nm+Xx+5g@mail.gmail.com>

Hi Nick:

Thank you Nick. It seems the error is really due to the sequence name. Now
"pseudo_wrap.py" is running after I change the names. But there are still
some things seem strange.

(1) I found in the file "log_step1", it shows below information at the top.
Does it matter?

NOTE: DatabaseOp not imported
NOTE: DatabaseOp not imported
...

(2) It also shows below information
Done!
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
sh:
/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin//tfasty34:
No such file or directory
....

While when I look into the folder
"/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.8e/bin/", I found
there is no file "tfasty34". Instead, there is a file named "tfasty36".
fasta36  fastf36  fastm36  fasts36  fastx36  fasty36  ggsearch36
glsearch36  lalign36  map_db  README  ssearch36  tfastf36  tfastm36
tfasts36  tfastx36  tfasty36

Do you have any suggestions on this?

Best
Quanwei

2017-12-11 10:18 GMT-05:00 Quanwei Zhang <qwzhang0601 at gmail.com>:

> Thank you Nick. The output is shown below.
>
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 4330, in <module>
>     parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
> line 3050, in get_qualified4
>     N = sizes[L[0]]
> KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
> Traceback (most recent call last):
>   File "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
> line 98, in <module>
>     oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
> IndexError: list index out of range
> Done!
>
> NOTE: DatabaseOp not imported
> Program  : tfasty34
> Pair list: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
> Fasta1   : ../../prediction2_final.proteins.fasta
> Fasta2   : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord.fa
> Fasta dir: /gs/gsfs0/users/qzhang/tools/maker2_pseudogene/fasta36.3.
> 8e/bin/
> Working d:
> Flags    : -A -m 3 -q
> E thres  : 1.0
> Read gene pairs...
>  0 pairs
> Read fasta files...
> Do sw...
> Done!
> Read BLOSUM50 matrix...
> Read the sw.out file...
> Compare sequences:
>  total: 0 alignments
> Done!
> Check parameter file...
>  default: ml_t=30
>  default: ev_t=5
>  default: ml_p=0.05
>  default: id_t=40
> Filter ../maker2.blastn.m...
>  E:5 I:40 L:30 P:0.05
> Get pseudoexons...
>  pseudoexon file: ../maker2.blastn.m_parsed_G500.PE
> Get phase 1 pseudogene...
>  phase1 ps file: ../maker2.blastn.m_parsed_G500.PE_I500.PS1
> Get pair file and subject coordinates...
>  pair file  : ../maker2.blastn.m_parsed_G500.PE_I500.PS1.pairs
>  coordinates: ../maker2.blastn.m_parsed_G500.PE_I500.PS1.subj_coord
> Get phase 1 pseudogene sequences...
>  phase 1 ps sequence: ../maker2.blastn.m_parsed_
> G500.PE_I500.PS1.subj_coord.fa
> Find stop and framshifts...
>  Smith-Waterman outputs: ../maker2.blastn.m_parsed_
> G500.PE_I500.PS1_pairs.sw.*
>  Final output: ../maker2.blastn.m_parsed_G500.PE_I500.PS1_pairs.sw.out.
> disable_count
>
> The pseudogene pipeline has finished!
>
>
> Best
> Quanwei
>
> 2017-12-11 10:01 GMT-05:00 <panchyni at msu.edu>:
>
>> Quanwei, in addition to checking the sequence file, can you also send
>> me the standard output of the run (this the text that normally prints
>> to the terminal unless you pipe it somewhere else)? This would help
>> in diagnosing the problem, but Shin-Han is likely correct that it is an
>> issue in the name formatting.
>>
>> Nick
>>
>> Quoting Shin-Han Shiu <shius at msu.edu>:
>>
>> > Hi Mike and Carson, we will take over from here. Thanks for referring
>> > the message to us.
>> >
>> > Quanwei, it looks like for some reason your input sequence file is
>> > missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue
>> > with the sequence name since the code use space as delimiter in
>> > places. Can you check your sequence file for this sequence and let us
>> > know how the name after ">" look like?
>> >
>> > Nick, sorry for bugging you. Do you have any input on this?
>> >
>> > Shinhan
>> >
>> >
>> > On 12/10/2017 8:37 PM, Michael Campbell wrote:
>> >> Hi Quanwei,
>> >>
>> >> My guess would be a file format issue, but the code has evolved
>> >> since I worked with it. The last time that ran it the fasta header
>> >> had to contain only the sequence ID without a space after it. That
>> >> was the big gotcha that I remember.
>> >>
>> >> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his
>> lab.
>> >>
>> >> Thanks,
>> >> Mike
>> >>
>> >> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com
>> >> <mailto:qwzhang0601 at gmail.com>> wrote:
>> >>
>> >>> Thank you Carson and Michael.
>> >>>
>> >>> Best
>> >>> Quanwei
>> >>>
>> >>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com
>> >>> <mailto:carsonhh at gmail.com>>:
>> >>>
>> >>>    I?m going to CC Michael Campbell on this. I wasn?t really
>> >>>    involved with any of the pseudogene accessory scripts and
>> >>>    protocols that went with the MAKER-P publication nor have I
>> >>>    really been involved with pseudogene annotation in general. So
>> >>>    Michael might have more insight here.
>> >>>
>> >>>    ?Carson
>> >>>
>> >>>>    On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>> >>>>    <mailto:qwzhang0601 at gmail.com>> wrote:
>> >>>>
>> >>>>    Hello:
>> >>>>
>> >>>>    I am trying to identify pseudo genes following
>> >>>>    http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>> >>>>    <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseu
>> dogene>
>> >>>>
>> >>>>    After I get the blast result, I am trying to scan pseudogenes by
>> >>>>    the command "python pseudo_wrap.py parameter". But I got the
>> >>>>    following errors. Do you have any ideas and suggestions about
>> >>>>    the errors? Thanks.
>> >>>>
>> >>>>    ##below shows reported errors
>> >>>>    Traceback (most recent call last):
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
>> ParseBlast.py",
>> >>>>    line 4330, in <module>
>> >>>>        parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//
>> ParseBlast.py",
>> >>>>    line 3050, in get_qualified4
>> >>>>        N = sizes[L[0]]
>> >>>>    KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>> >>>>    Traceback (most recent call last):
>> >>>>      File
>> >>>>
>> >>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/s
>> cript_step3b.py",
>> >>>>    line 98, in <module>
>> >>>>        oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>> >>>>    IndexError: list index out of range
>> >>>>    Done!
>> >>>>
>> >>>>    Best
>> >>>>    Quanwei
>> >>>>    _______________________________________________
>> >>>>    maker-devel mailing list
>> >>>>    maker-devel at box290.bluehost.com
>> >>>>    <mailto:maker-devel at box290.bluehost.com>
>> >>>>    http://box290.bluehost.com/mailman/listinfo/maker-devel_yand
>> ell-lab.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=SeSN1OfBVQVhi5forovCTfSJGCO1bR7Q7LuCcWlhctI&e=>
>> >>>>
>> >>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.
>> bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.
>> org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt
>> _w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT
>> 8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>> >>>
>> >>>
>> >
>> > --
>> > --------------------------------------
>> > Shin-Han Shiu
>> > Michigan State University
>> > Department of Plant Biology
>> > 2265 Mol Plant Sci Bldg
>> > (TEL) +1-517-353-7196 <(517)%20353-7196>
>> > http://goo.gl/keiHZX
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwMCAw&c=nE__W8dFE-shTxStwXtp0A&r=amxxAQj1r58HtnljR_ldsiP-fOO39FxiO68ZT1UBHoE&m=p2cRRr06c6fbtMo9iCwpKi0X1QnRoogK33tX5Bfd5ek&s=pk3W0L_Z0dlNJDAdwrb7dA0_NSdr21LVNthDV6V43qg&e=>
>> > --------------------------------------
>> >
>> >
>>
>>
>
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From shius at msu.edu  Mon Dec 11 06:13:12 2017
From: shius at msu.edu (Shin-Han Shiu)
Date: Mon, 11 Dec 2017 08:13:12 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
Message-ID: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>

Hi Mike and Carson, we will take over from here. Thanks for referring 
the message to us.

Quanwei, it looks like for some reason your input sequence file is 
missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue 
with the sequence name since the code use space as delimiter in places. 
Can you check your sequence file for this sequence and let us know how 
the name after ">" look like?

Nick, sorry for bugging you. Do you have any input on this?

Shinhan


On 12/10/2017 8:37 PM, Michael Campbell wrote:
> Hi Quanwei,
>
> My guess would be a file format issue, but the code has evolved since 
> I worked with it. The last time that ran it the fasta header had to 
> contain only the sequence ID without a space after it. That was the 
> big gotcha that I remember.
>
> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>
> Thanks,
> Mike
>
> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com 
> <mailto:qwzhang0601 at gmail.com>> wrote:
>
>> Thank you Carson and Michael.
>>
>> Best
>> Quanwei
>>
>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com 
>> <mailto:carsonhh at gmail.com>>:
>>
>>     I?m going to CC Michael Campbell on this. I wasn?t really
>>     involved with any of the pseudogene accessory scripts and
>>     protocols that went with the MAKER-P publication nor have I
>>     really been involved with pseudogene annotation in general. So
>>     Michael might have more insight here.
>>
>>     ?Carson
>>
>>>     On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>>>     <mailto:qwzhang0601 at gmail.com>> wrote:
>>>
>>>     Hello:
>>>
>>>     I am trying to identify pseudo genes following
>>>     http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>>     <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
>>>
>>>     After I get the blast result, I am trying to scan pseudogenes by
>>>     the command "python pseudo_wrap.py parameter". But I got the
>>>     following errors. Do you have any ideas and suggestions about
>>>     the errors? Thanks.
>>>
>>>     ##below shows reported errors
>>>     Traceback (most recent call last):
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>     line 4330, in <module>
>>>     ??? parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>     line 3050, in get_qualified4
>>>     ??? N = sizes[L[0]]
>>>     KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>>     Traceback (most recent call last):
>>>     ? File
>>>     "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>>>     line 98, in <module>
>>>     ??? oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>>     IndexError: list index out of range
>>>     Done!
>>>
>>>     Best
>>>     Quanwei
>>>     _______________________________________________
>>>     maker-devel mailing list
>>>     maker-devel at box290.bluehost.com
>>>     <mailto:maker-devel at box290.bluehost.com>
>>>     https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIDaQ&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=INRHprJZS3nvj3I7v7qRvlfE1rmWrIY_tWRnylEUFO0&s=wNeNO4xtaEKyLYvP4UJ-Y_ZtwUYAXtahXdEPgYOjFt4&e=
>>>     <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>
>>

-- 
--------------------------------------
Shin-Han Shiu
Michigan State University
Department of Plant Biology
2265 Mol Plant Sci Bldg
(TEL) +1-517-353-7196
https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwIDaQ&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=INRHprJZS3nvj3I7v7qRvlfE1rmWrIY_tWRnylEUFO0&s=vgKsVpK-Ie-YtMflGCeMoYOPLBVpWJP62soYw76Aqmo&e=
--------------------------------------

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From panchyni at msu.edu  Mon Dec 11 08:01:37 2017
From: panchyni at msu.edu (panchyni at msu.edu)
Date: Mon, 11 Dec 2017 10:01:37 -0500
Subject: [maker-devel] Error from Pseudo gene identification scripts
In-Reply-To: <a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
References: <CAOW6FSJAkZ4q9O6bL-KS3vf=+XjOJCxD+A7Vc-FG89TXiToVSw@mail.gmail.com>
	<2C409CD4-D917-439A-8547-45589083EFC1@gmail.com>
	<CAOW6FSKPTd2qM1i8yKinVApQ72u4eizXwLwbro7UDpfbPbpgKQ@mail.gmail.com>
	<13CDC27C-DDE2-4439-B13C-9185CD56CD2A@gmail.com>
	<a316502a-1384-0def-0d71-cd94fa99a02c@msu.edu>
Message-ID: <20171211100137.89911puy7wxi9scx@mail.msu.edu>

Quanwei, in addition to checking the sequence file, can you also send
me the standard output of the run (this the text that normally prints
to the terminal unless you pipe it somewhere else)? This would help
in diagnosing the problem, but Shin-Han is likely correct that it is an
issue in the name formatting.

Nick

Quoting Shin-Han Shiu <shius at msu.edu>:

> Hi Mike and Carson, we will take over from here. Thanks for referring 
> the message to us.
>
> Quanwei, it looks like for some reason your input sequence file is 
> missing "maker-Contig2656-snap-gene-1.9-mRNA-1". This can be an issue 
> with the sequence name since the code use space as delimiter in 
> places. Can you check your sequence file for this sequence and let us 
> know how the name after ">" look like?
>
> Nick, sorry for bugging you. Do you have any input on this?
>
> Shinhan
>
>
> On 12/10/2017 8:37 PM, Michael Campbell wrote:
>> Hi Quanwei,
>>
>> My guess would be a file format issue, but the code has evolved 
>> since I worked with it. The last time that ran it the fasta header 
>> had to contain only the sequence ID without a space after it. That 
>> was the big gotcha that I remember.
>>
>> I?ve ccd Shin-Han Shiu on this one. The pipeline was developed in his lab.
>>
>> Thanks,
>> Mike
>>
>> On Dec 8, 2017, at 8:46 AM, Quanwei Zhang <qwzhang0601 at gmail.com 
>> <mailto:qwzhang0601 at gmail.com>> wrote:
>>
>>> Thank you Carson and Michael.
>>>
>>> Best
>>> Quanwei
>>>
>>> 2017-12-07 23:42 GMT-05:00 Carson Holt <carsonhh at gmail.com 
>>> <mailto:carsonhh at gmail.com>>:
>>>
>>>? ? I?m going to CC Michael Campbell on this. I wasn?t really
>>>? ? involved with any of the pseudogene accessory scripts and
>>>? ? protocols that went with the MAKER-P publication nor have I
>>>? ? really been involved with pseudogene annotation in general. So
>>>? ? Michael might have more insight here.
>>>
>>>? ? ?Carson
>>>
>>>>? ? On Dec 7, 2017, at 2:44 PM, Quanwei Zhang <qwzhang0601 at gmail.com
>>>>? ? <mailto:qwzhang0601 at gmail.com>> wrote:
>>>>
>>>>? ? Hello:
>>>>
>>>>? ? I am trying to identify pseudo genes following
>>>>? ? http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene
>>>>? ? <http://shiulab.plantbiology.msu.edu/index.php/Protocol:Pseudogene>
>>>>
>>>>? ? After I get the blast result, I am trying to scan pseudogenes by
>>>>? ? the command "python pseudo_wrap.py parameter". But I got the
>>>>? ? following errors. Do you have any ideas and suggestions about
>>>>? ? the errors? Thanks.
>>>>
>>>>? ? ##below shows reported errors
>>>>? ? Traceback (most recent call last):
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>>? ? line 4330, in <module>
>>>>? ? ??? parse.get_qualified4(blast,fasta,E,I,L,P,Q)
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg//ParseBlast.py",
>>>>? ? line 3050, in get_qualified4
>>>>? ? ??? N = sizes[L[0]]
>>>>? ? KeyError: 'maker-Contig2656-snap-gene-1.9-mRNA-1'
>>>>? ? Traceback (most recent call last):
>>>>? ? ? File
>>>>? ? 
>>>> "/gs/gsfs0/users/qzhang/tools/maker2_pseudogene/pseudo_pkg/script_step3b.py",
>>>>? ? line 98, in <module>
>>>>? ? ??? oup.write("%s\t%s\t%s\t%s\n" % (all_contigs[i][0][0],
>>>>? ? IndexError: list index out of range
>>>>? ? Done!
>>>>
>>>>? ? Best
>>>>? ? Quanwei
>>>>? ? _______________________________________________
>>>>? ? maker-devel mailing list
>>>>? ? maker-devel at box290.bluehost.com
>>>>? ? <mailto:maker-devel at box290.bluehost.com>
>>>>? ? https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIFAw&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=O8wVZED5PZBb8ShEI3XsYeVWU8owwPT37_nVEoRY6ak&s=mH6XtbLd3JEy6xKyCX_76sXdhbyq_e0CczfOpQvrqEk&e=
>>>>? ? 
>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwMFaQ&c=nE__W8dFE-shTxStwXtp0A&r=rf2UnAHeUSb4ulp2JbXt_w&m=4eCUx-nUmZ43poIB8geM9XkIKXoND4Yzi4aw4bXAfUU&s=2GYyuVGmT8vENvvk0LPCHjSUEmEzXdcyOnhXDjoTEcQ&e=>
>>>
>>>
>
> -- 
> --------------------------------------
> Shin-Han Shiu
> Michigan State University
> Department of Plant Biology
> 2265 Mol Plant Sci Bldg
> (TEL) +1-517-353-7196
> https://urldefense.proofpoint.com/v2/url?u=http-3A__goo.gl_keiHZX&d=DwIFAw&c=nE__W8dFE-shTxStwXtp0A&r=sUBp8FRSXcr7GsPWEwuzZejm3cQdsovXfs8sNKwEUz0&m=O8wVZED5PZBb8ShEI3XsYeVWU8owwPT37_nVEoRY6ak&s=_zXpOrewnF9jjZxW98cCBUElJjHBanS6XxkTcOCwvdI&e=
> --------------------------------------
>
>
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From jacques.dainat at bils.se  Sat Dec  2 03:53:22 2017
From: jacques.dainat at bils.se (Jacques Dainat)
Date: Sat, 2 Dec 2017 11:53:22 +0100
Subject: [maker-devel] substr outside of string in PhatHits_utils.pm
In-Reply-To: <182CDDD3-A108-4095-9AC4-A2C198D34107@ibv.uio.no>
References: <B3C7D2DB-8716-4C9F-BF3A-BB9E82057BBB@ibv.uio.no>
	<5E5CA836-91B1-4AA8-8DC3-68FB9885EB43@gmail.com>
	<182CDDD3-A108-4095-9AC4-A2C198D34107@ibv.uio.no>
Message-ID: <381F5EAB-2C0B-4DED-BD32-573D1B1C2B47@bils.se>

Dear Carson,

I got exactly the same problem as Ole Kristian Torresen.
substr outside of string at /projects/cees/bin/maker/maker-3.01.1/bin/../lib/PhatHit_utils.pm line 850.
I also tried with the version 3.00.0 and got the same problem.

My run:
I was using gff3 alignements as gff ESTs, proteins and activating repeat masking and trna.

The code line in PhatHit_utils.pm is the following:
      my $transcript_seq  = maker::auto_annotator::get_transcript_seq($hit, $seq); # few line before
      ?..
 	#fix stop codon by walking downstream 
 	my $has_stop = $tM->is_ter_codon(substr($transcript_seq, $end-1-3, 3));   # <= line 850

So, I relaunched using the ?debug option but didn?t find anything useful.

Consequently I modified the  code to display the $transcript_seq object.
I joined the log were you can see the printed object from line 10955. 
I also printed the size of the sequence (length($transcript_seq)) and $end.
We can see that it crashes because the sequence is 1369 bp long and we try to extract a stop codon from position 1372 (1376-1-3). 


Printing the object I saw that the bug looks to occur when handling the protein evidence Q8J0D9.1.
I checked if relaunching Maker using only this protein. But everything went fine.
Could it be the EST evidence that interfers how MAKER is handling the Q8J0D9.1 protein evidence ?

I hope you could help us.

Best regards,


Jacques Dainat, PhD
NBIS (National Bioinformatics Infrastructure Sweden)
Genome Annotation Service

Address:
Uppsala University, Biomedicinska Centrum
Department of Medical Biochemistry Microbiology, Genomics
Husargatan 3, box 582
S-75123 Uppsala Sweden
Phone: +46 18 471 46 25

> On 21 Nov 2017, at 14:57, Ole Kristian T?rresen <o.k.torresen at ibv.uio.no> wrote:
> 
> Thank you Carson.
> 
> After a bit of struggling, I can confirm that the same error occurs in MAKER 3.01.2 (I guess you meant that version, couldn?t find 3.02.02).
> 
> I am providing a GFF to est_gff, with match and match_part entries. For at least one of the scaffolds, the last coordinate (column 5) is the same number as the length of the scaffold. That should be allowed by the GFF3 standard, right?
> 
> How can I troubleshoot this? The error message is not so informative. It seems that PhatHit_utils.pm tries to find a stop codon. Snipped from that file, lines 849-850:
> #fix stop codon by walking downstream
> my $has_stop = $tM->is_ter_codon(substr($transcript_seq, $end-1-3, 3));
> 
> The GFF I am using was the output of Mikado (https://www.biorxiv.org/content/early/2017/11/09/216994), which is GFF3, and then processed a bit to make it suitable for MAKER. First converted to GTF by 'mikado util convert mikado.loci.gff3 mikado.loci.gtf'
> 
> Then I selected only mRNA and exon entries, and changed mRNA to transcript to make it look like cufflinks output (and set a dummy score):
> grep -P "\tmRNA\t|\texon\t" mikado.loci.gtf |sed "s/mRNA/transcript/g" |awk -F "\t" '{$9=$9"cov \"10.0\";"; OFS="\t"; print $1, $2, $3, $4, $5, $6, $7, $8, $9}' > mikado.loci.score.gtf
> 
> Before converting with cufflinks2gff3:
> cufflinks2gff3 mikado.loci.score.gtf > ests.score.gff3
> 
> Thank you.
> 
> Ole
> 
> 
>> On 09 Nov 2017, at 17:28, Carson Holt <carsonhh at gmail.com> wrote:
>> 
>> My first guess is that if you are using gff3 files as input to anything, then there may be an  issue with your GFF3 file. My second suggestion is to try MAKER 3.02.02 to see if it has the same issue.
>> 
>> ?Carson
>> 
>> 
>>> On Nov 9, 2017, at 2:44 AM, Ole Kristian T?rresen <o.k.torresen at ibv.uio.no> wrote:
>>> 
>>> Dear all,
>>> I'm having an issue with MAKER which I'm unable to wrap my head around. Hopefully the issue is easily identifiable and resolvable for someone with more insight than me. Please find the log output attached below. I cannot find any more information than this in any logs. Many scaffolds do complete fine, but some of the longest ones have issues.
>>> 
>>> Thank you.
>>> 
>>> Sincerely,
>>> Ole K. T?rresen
>>> 
>>> Error message:
>>> 
>>> #--------- command -------------#
>>> Widget::augustus:
>>> /projects/cees/bin/augustus/augustus-3.2.3/bin/augustus  --strand=backward --species=gadMor2_code_braker2 --UTR=off --hintsfile=/tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_brak
>>> er2.auto_annotator.xdef.augustus --extrinsicCfgFile=/projects/cees/bin/augustus/augustus-3.2.3/config/extrinsic/extrinsic.MPE.cfg --AUGUSTUS_CONFIG_PATH=/projects/cees/bin/augustus/augustus-3.2
>>> .3/config /tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_braker2.auto_annotator.augustus.fasta > /tmp/18899594.d/maker_m8xwVp/0/34_2.22239-28465.gadMor2_code_braker2.auto_annotato
>>> r.augustus
>>> #-------------------------------#
>>> deleted:0 genes
>>> begin called get_best_alt_splices1
>>> ...processing 0 of 2
>>> ...processing 1 of 2
>>> end called get_best_alt_splices1
>>> ...processing 0 of 20
>>> ...processing 1 of 20
>>> ...processing 2 of 20
>>> ...processing 3 of 20
>>> ...processing 4 of 20
>>> ...processing 5 of 20
>>> ...processing 6 of 20
>>> ...processing 7 of 20
>>> ...processing 8 of 20
>>> ...processing 9 of 20
>>> ...processing 10 of 20
>>> ...processing 11 of 20
>>> ...processing 12 of 20
>>> ...processing 13 of 20
>>> ...processing 14 of 20
>>> ...processing 15 of 20
>>> ...processing 16 of 20
>>> ...processing 17 of 20
>>> ...processing 18 of 20
>>> ...processing 19 of 20
>>> substr outside of string at /projects/cees/bin/maker/maker-3.1.1/bin/../lib/PhatHit_utils.pm line 850.
>>> --> rank=NA, hostname=compute-31-18.local
>>> ERROR: Failed while annotating transcripts
>>> ERROR: Chunk failed at level:1, tier_type:4
>>> FAILED CONTIG:GmG20150304_scaffold_8692
>>> 
>>> ERROR: Chunk failed at level:6, tier_type:0
>>> FAILED CONTIG:GmG20150304_scaffold_8692
>>> 
>>> examining contents of the fasta file and run log
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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Scientific Linux release 6.9 (Carbon)
Kernel 2.6.32-696.el6.x86_64 on an x86_64

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	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
****MODULE VERSION INFO
****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
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	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
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lib/Bio/Search/Hit/PhatHit/trnascan.pm
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	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
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	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
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lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
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	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
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	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
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	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
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	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
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	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr****MODULE VERSION INFO
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
perl version v5.10.1
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
****MODULE VERSION INFO
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
****MODULE VERSION INFO
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
perl version v5.10.1
perl version v5.10.1
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
****MODULE VERSION INFO
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
perl version v5.10.1
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
perl version v5.10.1
****MODULE VERSION INFO
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
perl version v5.10.1
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
****MODULE VERSION INFO
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
perl version v5.10.1
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
****MODULE VERSION INFO
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
perl version v5.10.1
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
perl version v5.10.1
****MODULE VERSION INFO
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
perl version v5.10.1
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
perl version v5.10.1
****MODULE VERSION INFO
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
perl version v5.10.1
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
****MODULE VERSION INFO
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
perl version v5.10.1
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
****MODULE VERSION INFO
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
perl version v5.10.1
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
****MODULE VERSION INFO
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm












	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm


	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOW	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
N	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/paren	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/I	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchI	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	ma	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/biop





	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
t.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
terator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
O/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
ker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
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	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
erl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
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	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
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	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	1.04	strict	/usr/share/perl5/strict.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	2.14	base	/usr/share/perl5/base.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	1.00	locale	/usr/share/perl5/locale.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.09	re	/usr/lib64/perl5/re.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.07	overload	/usr/share/perl5/overload.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
STATUS: Parsing control files...
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm


	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
Calling GI::load_control_files at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 444.
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm


	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	2.14	base	/usr/share/perl5/base.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
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	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
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	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
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	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
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	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.09	re	/usr/lib64/perl5/re.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm


	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm




	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm




	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm






	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
****MODULE VERSION INFO
perl version v5.10.1
perl version v5.10.1
****MODULE VERSION INFO
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
perl version v5.10.1
****MODULE VERSION INFO
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	0.04	Acme::Damn	/usr/lib64/perl5/vendor_perl/Acme/Damn.pm
	1.00	AnyDBM_File	/usr/share/perl5/AnyDBM_File.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	5.68	AutoLoader	/usr/share/perl5/AutoLoader.pm
	UNKNOWN	Bio::AnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/AnalysisParserI.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::AnnotatableI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotatableI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Annotation::Collection	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/Collection.pm
	UNKNOWN	Bio::Annotation::SimpleValue	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/SimpleValue.pm
	UNKNOWN	Bio::Annotation::TypeManager	/sw/bioperl/bioperl-1.6.922/Bio/Annotation/TypeManager.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::AnnotationCollectionI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationCollectionI.pm
	UNKNOWN	Bio::AnnotationI	/sw/bioperl/bioperl-1.6.922/Bio/AnnotationI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	1.006922	Bio::DB::Fasta	/sw/bioperl/bioperl-1.6.922/Bio/DB/Fasta.pm
	UNKNOWN	Bio::DB::InMemoryCache	/sw/bioperl/bioperl-1.6.922/Bio/DB/InMemoryCache.pm
	UNKNOWN	Bio::DB::IndexedBase	/sw/bioperl/bioperl-1.6.922/Bio/DB/IndexedBase.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::DB::RandomAccessI	/sw/bioperl/bioperl-1.6.922/Bio/DB/RandomAccessI.pm
	UNKNOWN	Bio::DB::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/DB/SeqI.pm
	UNKNOWN	Bio::DescribableI	/sw/bioperl/bioperl-1.6.922/Bio/DescribableI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Event::EventGeneratorI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventGeneratorI.pm
	UNKNOWN	Bio::Event::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/Event/EventHandlerI.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Factory::ObjectFactory	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactory.pm
	UNKNOWN	Bio::Factory::ObjectFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/ObjectFactoryI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Factory::SequenceFactoryI	/sw/bioperl/bioperl-1.6.922/Bio/Factory/SequenceFactoryI.pm
	UNKNOWN	Bio::FeatureHolderI	/sw/bioperl/bioperl-1.6.922/Bio/FeatureHolderI.pm
	UNKNOWN	Bio::IdentifiableI	/sw/bioperl/bioperl-1.6.922/Bio/IdentifiableI.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	UNKNOWN	Bio::LocatableSeq	/sw/bioperl/bioperl-1.6.922/Bio/LocatableSeq.pm
	UNKNOWN	Bio::Location::Atomic	/sw/bioperl/bioperl-1.6.922/Bio/Location/Atomic.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	UNKNOWN	Bio::Location::CoordinatePolicyI	/sw/bioperl/bioperl-1.6.922/Bio/Location/CoordinatePolicyI.pm
	UNKNOWN	Bio::Location::Fuzzy	/sw/bioperl/bioperl-1.6.922/Bio/Location/Fuzzy.pm
	UNKNOWN	Bio::Location::FuzzyLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/FuzzyLocationI.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Location::Simple	/sw/bioperl/bioperl-1.6.922/Bio/Location/Simple.pm
	UNKNOWN	Bio::Location::Split	/sw/bioperl/bioperl-1.6.922/Bio/Location/Split.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	UNKNOWN	Bio::Location::SplitLocationI	/sw/bioperl/bioperl-1.6.922/Bio/Location/SplitLocationI.pm
	UNKNOWN	Bio::Location::WidestCoordPolicy	/sw/bioperl/bioperl-1.6.922/Bio/Location/WidestCoordPolicy.pm
	UNKNOWN	Bio::LocationI	/sw/bioperl/bioperl-1.6.922/Bio/LocationI.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::PrimarySeq	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeq.pm
	1.006922	Bio::PrimarySeqI	/sw/bioperl/bioperl-1.6.922/Bio/PrimarySeqI.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Range	/sw/bioperl/bioperl-1.6.922/Bio/Range.pm
	UNKNOWN	Bio::RangeI	/sw/bioperl/bioperl-1.6.922/Bio/RangeI.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	1.006922	Bio::Root::Exception	/sw/bioperl/bioperl-1.6.922/Bio/Root/Exception.pm
	UNKNOWN	Bio::Root::HTTPget	/sw/bioperl/bioperl-1.6.922/Bio/Root/HTTPget.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Root::IO	/sw/bioperl/bioperl-1.6.922/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/sw/bioperl/bioperl-1.6.922/Bio/Root/Root.pm
	1.006922	Bio::Root::RootI	/sw/bioperl/bioperl-1.6.922/Bio/Root/RootI.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	1.006922	Bio::Root::Version	/sw/bioperl/bioperl-1.6.922/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/sw/bioperl/bioperl-1.6.922/Bio/Search/HSP/HSPI.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/evm.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	0.01	Bio::Search::HSP::PhatHSP::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/rapsearch.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.006922	Bio::Search::Hit::GenericHit	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/sw/bioperl/bioperl-1.6.922/Bio/Search/Hit/HitI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/evm.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	0.01	Bio::Search::Hit::PhatHit::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/rapsearch.pm
	1.006922	Bio::Search::Hit::PhatHit::repeatmasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.006922	Bio::Search::SearchUtils	/sw/bioperl/bioperl-1.6.922/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/sw/bioperl/bioperl-1.6.922/Bio/SearchIO/SearchResultEventBuilder.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	UNKNOWN	Bio::Seq	/sw/bioperl/bioperl-1.6.922/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/sw/bioperl/bioperl-1.6.922/Bio/Seq/SeqFactory.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/sw/bioperl/bioperl-1.6.922/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Generic.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeature/SimilarityPair.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	UNKNOWN	Bio::SeqFeatureI	/sw/bioperl/bioperl-1.6.922/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/sw/bioperl/bioperl-1.6.922/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/sw/bioperl/bioperl-1.6.922/Bio/SeqUtils.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	1.006922	Bio::Tools::CodonTable	/sw/bioperl/bioperl-1.6.922/Bio/Tools/CodonTable.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	UNKNOWN	Bio::Tools::GFF	/sw/bioperl/bioperl-1.6.922/Bio/Tools/GFF.pm
	1.006922	Bio::Tools::IUPAC	/sw/bioperl/bioperl-1.6.922/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	0.01	CGL::Annotation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Annotation::Feature::Contig	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	0.01	CGL::Annotation::Feature::Intron	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	0.01	CGL::Annotation::FeatureLocation	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.01	CGL::Annotation::Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Clone.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	0.01	CGL::Ontology::Node	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	0.01	CGL::Ontology::Ontology	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/SO.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.01	CGL::Ontology::Trace	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/Revcomp.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	0.01	CGL::TranslationMachine	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/CGL/TranslationMachine.pm
	1.3301	Carp	/usr/local/share/perl5/Carp.pm
	1.3301	Carp::Heavy	/usr/local/share/perl5/Carp/Heavy.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.38	Clone	/usr/local/lib64/perl5/Clone.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.3	Cwd	/usr/lib64/perl5/Cwd.pm
	1.46	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	1.633	DBI	/usr/local/lib64/perl5/DBI.pm
	1.82	DB_File	/usr/lib64/perl5/DB_File.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	2.124	Data::Dumper	/usr/lib64/perl5/Data/Dumper.pm
	0.11	Datastore::Base	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Datastore/MD5.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.39	Digest::MD5	/usr/lib64/perl5/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/Digest/base.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	UNKNOWN	Dumper::GFF::GFFV3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Dumper/XML/Game_Xml.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	1.10	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	1.11	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	UNKNOWN	Error::Simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error/Simple.pm
	5.63	Exporter	/usr/share/perl5/Exporter.pm
	5.63	Exporter::Heavy	/usr/share/perl5/Exporter/Heavy.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	0.042	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunk.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	UNKNOWN	FastaChunker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaDB.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	UNKNOWN	FastaFile	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm
	1.06	Fcntl	/usr/lib64/perl5/Fcntl.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	2.77	File::Basename	/usr/share/perl5/File/Basename.pm
	2.14	File::Copy	/usr/share/perl5/File/Copy.pm
	1.14	File::Find	/usr/share/perl5/File/Find.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	1.06	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/NFSLock.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	2.08	File::Path	/usr/share/perl5/File/Path.pm
	3.3	File::Spec	/usr/share/perl5/File/Spec.pm
	3.3	File::Spec::Unix	/usr/share/perl5/File/Spec/Unix.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	0.22	File::Temp	/usr/share/perl5/File/Temp.pm
	1.09	File::Which	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/File/Which.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.50	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GFFDB.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	GI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl5/Getopt/Long.pm
	5.831	HTTP::Date	/usr/share/perl5/vendor_perl/HTTP/Date.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	5.827	HTTP::Headers	/usr/share/perl5/vendor_perl/HTTP/Headers.pm
	5.832	HTTP::Message	/usr/share/perl5/vendor_perl/HTTP/Message.pm
	5.827	HTTP::Request	/usr/share/perl5/vendor_perl/HTTP/Request.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	5.824	HTTP::Response	/usr/share/perl5/vendor_perl/HTTP/Response.pm
	5.817	HTTP::Status	/usr/share/perl5/vendor_perl/HTTP/Status.pm
	1.25	IO	/usr/lib64/perl5/IO.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	1.14	IO::File	/usr/lib64/perl5/IO/File.pm
	1.28	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.17	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.31	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.31	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.04	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	0.78	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Iterator::Any	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Iterator/GFF3.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	5.833	LWP	/usr/share/perl5/vendor_perl/LWP.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	LWP::MemberMixin	/usr/share/perl5/vendor_perl/LWP/MemberMixin.pm
	5.829	LWP::Protocol	/usr/share/perl5/vendor_perl/LWP/Protocol.pm
	5.833	LWP::UserAgent	/usr/share/perl5/vendor_perl/LWP/UserAgent.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	0.402	List::MoreUtils	/usr/local/lib64/perl5/List/MoreUtils.pm
	0.402	List::MoreUtils::PP	/usr/local/lib64/perl5/List/MoreUtils/PP.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	0.402	List::MoreUtils::XS	/usr/local/lib64/perl5/List/MoreUtils/XS.pm
	1.41	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	MAKER::ConfigData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/MAKER/ConfigData.pm
	1.17	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../perl/lib/Parallel/Application/MPI.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/PostData.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	0.51	Proc::ProcessTable	/usr/local/lib64/perl5/Proc/ProcessTable.pm
	0.02	Proc::ProcessTable::Process	/usr/local/lib64/perl5/Proc/ProcessTable/Process.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	1.0	Proc::ProcessTable_simple	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Process::MpiTiers	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiTiers.pm
	1.41	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SimpleCluster.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	1.82	Socket	/usr/lib64/perl5/Socket.pm
	UNKNOWN	SpaceBase	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/SpaceBase.pm
	2.51	Storable	/usr/local/lib64/perl5/Storable.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.11	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	0.11	Sys::SigAction	/usr/share/perl5/vendor_perl/Sys/SigAction.pm
	2.00	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	1.03	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	1.9721	Time::HiRes	/usr/lib64/perl5/Time/HiRes.pm
	1.1901	Time::Local	/usr/share/perl5/Time/Local.pm
	1.40	URI	/usr/share/perl5/URI.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	3.29	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/RepeatMasker.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	Widget::augustus	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastn.pm
	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	UNKNOWN	Widget::blastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::evm	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/evm.pm
	UNKNOWN	Widget::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/est2genome.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	Widget::exonerate::protein2genome	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/formater.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	Widget::genemark	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::rapsearch	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/rapsearch.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	Widget::snap	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/tblastx.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	UNKNOWN	Widget::trnascan	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Widget/trnascan.pm
	0.10	XSLoader	/usr/lib64/perl5/XSLoader.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	attributes	/usr/share/perl5/attributes.pm
	2.14	base	/usr/share/perl5/base.pm
	1.03	bytes	/usr/share/perl5/bytes.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	UNKNOWN	clean	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/clean.pm
	UNKNOWN	cluster	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/cluster.pm
	UNKNOWN	compare	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/compare.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm


	1.17	constant	/usr/share/perl5/constant.pm
	UNKNOWN	ds_utility	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/exonerate/splice_info.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	1.01	warnings::register	/usr/share/perl5/warnings/register.pm


	0.62	lib	/usr/lib64/perl5/lib.pm
	1.00	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/maker/sens_spec.pm
	1.07	overload	/usr/share/perl5/overload.pm
	0.228	parent	/usr/local/share/perl5/parent.pm
	UNKNOWN	polisher	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/polisher/exonerate/protein.pm
	0.09	re	/usr/lib64/perl5/re.pm
	UNKNOWN	repeat_mask_seq	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/shadow_AED.pm
	1.04	sigtrap	/usr/share/perl5/sigtrap.pm
	1.04	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.01	vars	/usr/share/perl5/vars.pm
	1.06	warnings	/usr/share/perl5/warnings.pm


	1.01	warnings::register	/usr/share/perl5/warnings/register.pm
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 489.
Calling GI::new_instance_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 456.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 491.
Calling GI::mount_check at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 458.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 476.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
STATUS: Processing and indexing input FASTA files...
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling GI::s_abs_path at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 515.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 525.
Calling GI::split_db at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 606.
Calling GI::split_db at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 606.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::split_db at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 606.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::split_db at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 606.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling GI::set_global_temp at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 496.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 548.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 548.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 548.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling List::Util::shuffle at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 548.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 613.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 614.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling GI::create_blastdb at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 570.
Calling File::Path::rmtree at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling Iterator::Any::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling Iterator::Any::nextDef at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling Iterator::Any::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling mkdir at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 571.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling GI::build_fasta_index at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 618.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 619.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
STATUS: Setting up database for any GFF3 input...
Calling GFFDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 625.
Calling GFFDB::next_build at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 627.
Calling ds_utility::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 631.
A data structure will be created for you at:
/projects/annotation/thielavia_terrestris/maker/test/unitig_14.maker.output/unitig_14_datastore

To access files for individual sequences use the datastore index:
/projects/annotation/thielavia_terrestris/maker/test/unitig_14.maker.output/unitig_14_master_datastore_index.log

Calling Datastore::MD5::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 632.
Calling Iterator::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 635.
Calling Iterator::Fasta::skip_file at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 637.
Calling Iterator::Fasta::step at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 639.
STATUS: Now running MAKER...
examining contents of the fasta file and run log
Calling Datastore::MD5::mkdir at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 438.
Calling Datastore::MD5::id_to_dir at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 438.
Calling uri_escape at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 438.
Calling File::Path::mkpath at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 438.



--Next Contig--

Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Processing run.log file...
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
#---------------------------------------------------------------------
Now starting the contig!!
SeqID: unitig_14|quiver
Length: 240068
#---------------------------------------------------------------------


Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 461.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
setting up GFF3 output and fasta chunks
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/maker line 1369 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Process/MpiChunk.pm line 585.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
processing the chunk divide
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
preparing evidence clusters for annotations
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
preparing evidence clusters for annotations
Preparing evidence for hint based annotation
cleaning clusters....
total clusters:1 now processing 0
cleaning clusters....
total clusters:1 now processing 0
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:15 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
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 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:15 now processing 0
 ...processing 0 of 5
 ...processing 1 of 5
 ...processing 2 of 5
 ...processing 3 of 5
 ...processing 4 of 5
total clusters:15 now processing 0
 ...processing 0 of 3
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total clusters:15 now processing 0
 ...processing 0 of 12
 ...processing 1 of 12
 ...processing 2 of 12
 ...processing 3 of 12
 ...processing 4 of 12
 ...processing 5 of 12
 ...processing 6 of 12
 ...processing 7 of 12
 ...processing 8 of 12
 ...processing 9 of 12
Preparing evidence for hint based annotation
 ...processing 10 of 12
 ...processing 11 of 12
total clusters:15 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:15 now processing 0
 ...processing 0 of 19
 ...processing 1 of 19
 ...processing 2 of 19
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in cluster::shadow_cluster...
 ...processing 7 of 19
...finished clustering.
cleaning clusters....
total clusters:6 now processing 0
total clusters:6 now processing 0
total clusters:6 now processing 0
 ...processing 0 of 30
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total clusters:15 now processing 0
 ...processing 0 of 16
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total clusters:15 now processing 0
total clusters:15 now processing 0
 ...processing 0 of 14
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 ...processing 10 of 14
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total clusters:15 now processing 0
 ...processing 0 of 6
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 ...processing 3 of 6
 ...processing 17 of 30
 ...processing 4 of 6
 ...processing 5 of 6
total clusters:15 now processing 0
 ...processing 0 of 3
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total clusters:15 now processing 0
 ...processing 0 of 10
 ...processing 1 of 10
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 ...processing 3 of 10
 ...processing 4 of 10
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 ...processing 6 of 10
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 ...processing 9 of 10
total clusters:15 now processing 0
 ...processing 0 of 3
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 ...processing 2 of 3
total clusters:15 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:15 now processing 0
 ...processing 0 of 16
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in cluster::shadow_cluster...
...finished clustering.
 ...processing 24 of 30
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in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:10 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
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 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:10 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:10 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:10 now processing 0
 ...processing 0 of 9
 ...processing 1 of 9
 ...processing 2 of 9
 ...processing 3 of 9
 ...processing 4 of 9
 ...trimming the rest
total clusters:6 now processing 0
 ...processing 0 of 7
 ...processing 1 of 7
 ...processing 2 of 7
 ...processing 3 of 7
 ...processing 5 of 9
 ...processing 4 of 7
 ...processing 5 of 7
 ...processing 6 of 9
 ...processing 6 of 7
total clusters:6 now processing 0
 ...processing 0 of 16
 ...processing 1 of 16
 ...processing 2 of 16
 ...processing 7 of 9
 ...processing 3 of 16
 ...processing 8 of 9
 ...processing 4 of 16
 ...processing 5 of 16
total clusters:10 now processing 0
 ...processing 0 of 4
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 ...processing 6 of 16
total clusters:10 now processing 0
 ...processing 0 of 17
 ...processing 1 of 17
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total clusters:6 now processing 0
 ...processing 9 of 17
 ...processing 0 of 43
 ...processing 1 of 43
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 ...processing 3 of 43
 ...processing 4 of 43
 ...processing 10 of 17
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 ...processing 14 of 43
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total clusters:10 now processing 0
 ...processing 0 of 16
 ...processing 1 of 16
 ...processing 2 of 16
 ...processing 3 of 16
 ...processing 4 of 16
 ...processing 17 of 43
 ...processing 5 of 16
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 ...processing 13 of 16
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 ...processing 14 of 16
 ...processing 25 of 43
 ...processing 15 of 16
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 ...processing 27 of 43
total clusters:10 now processing 0
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 28 of 43
 ...processing 2 of 13
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 ...processing 30 of 43
 ...processing 31 of 43
 ...processing 4 of 13
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 ...processing 8 of 13
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 ...processing 9 of 13
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 ...processing 42 of 43
 ...processing 10 of 13
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
 ...processing 0 of 2
 ...processing 1 of 2
total clusters:3 now processing 0
total clusters:3 now processing 0
 ...processing 0 of 35
 ...processing 1 of 35
 ...processing 11 of 13
 ...processing 2 of 35
 ...processing 3 of 35
 ...processing 4 of 35
 ...processing 5 of 35
 ...processing 12 of 13
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 ...processing 7 of 35
total clusters:10 now processing 0
 ...processing 0 of 5
 ...processing 1 of 5
 ...processing 8 of 35
 ...processing 2 of 5
 ...processing 9 of 35
 ...processing 3 of 5
 ...processing 10 of 35
 ...processing 4 of 5
 ...processing 11 of 35
total clusters:10 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
 ...processing 12 of 35
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:3 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:3 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 13 of 35
 ...processing 2 of 3
total clusters:3 now processing 0
in cluster::shadow_cluster...
...finished clustering.
 ...processing 14 of 35
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in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
 ...processing 6 of 20
annotating transcripts
Making transcripts
begin called get_best_alt_splices1
end called get_best_alt_splices1
 ...processing 7 of 20
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begin called get_best_alt_splices1
 ...processing 0 of 4
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end called get_best_alt_splices1
 ...processing 13 of 20
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 ...processing 15 of 20
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 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 4
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total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 20
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 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
 ...processing 0 of 12
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total clusters:40 now processing 0
total clusters:40 now processing 0
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total clusters:40 now processing 0
 ...processing 0 of 20
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begin called get_best_alt_splices1
 ...processing 0 of 7
 ...processing 1 of 7
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end called get_best_alt_splices1
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 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 14
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total clusters:40 now processing 0
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total clusters:40 now processing 0
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total clusters:40 now processing 0
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total clusters:40 now processing 0
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begin called get_best_alt_splices1
 ...processing 0 of 14
 ...processing 1 of 14
 ...processing 2 of 14
 ...processing 3 of 14
 ...processing 4 of 14
 ...processing 5 of 14
 ...processing 6 of 14
 ...processing 7 of 14
 ...processing 8 of 14
 ...processing 9 of 14
 ...processing 15 of 20
 ...processing 10 of 14
 ...processing 11 of 14
 ...processing 12 of 14
 ...processing 13 of 14
end called get_best_alt_splices1
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
 ...processing 0 of 7
 ...processing 1 of 7
 ...processing 2 of 7
 ...processing 3 of 7
 ...processing 4 of 7
 ...processing 5 of 7
 ...processing 6 of 7
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
 ...processing 12 of 20
clustering transcripts into genes for annotations
Processing transcripts into genes
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
 ...processing 0 of 15
 ...processing 1 of 15
 ...processing 2 of 15
 ...processing 3 of 15
 ...processing 4 of 15
 ...processing 5 of 15
 ...processing 6 of 15
 ...processing 7 of 15
 ...processing 8 of 15
 ...processing 9 of 15
 ...processing 10 of 15
 ...processing 11 of 15
 ...processing 12 of 15
 ...processing 13 of 15
 ...processing 14 of 15
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 2 of 13
 ...processing 3 of 13
 ...processing 4 of 13
 ...processing 5 of 13
 ...processing 6 of 13
 ...processing 7 of 13
 ...processing 8 of 13
 ...processing 9 of 13
 ...processing 10 of 13
 ...processing 11 of 13
 ...processing 12 of 13
total clusters:40 now processing 0
 ...processing 0 of 6
 ...processing 1 of 6
 ...processing 2 of 6
 ...processing 3 of 6
 ...processing 4 of 6
 ...processing 5 of 6
total clusters:40 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:40 now processing 0
 ...processing 0 of 15
 ...processing 1 of 15
 ...processing 2 of 15
 ...processing 3 of 15
 ...processing 4 of 15
 ...processing 5 of 15
 ...processing 6 of 15
 ...processing 7 of 15
 ...processing 8 of 15
 ...processing 9 of 15
 ...processing 10 of 15
 ...processing 11 of 15
 ...processing 12 of 15
 ...processing 13 of 15
 ...processing 14 of 15
total clusters:40 now processing 0
 ...processing 0 of 14
 ...processing 1 of 14
 ...processing 2 of 14
 ...processing 3 of 14
 ...processing 4 of 14
 ...processing 5 of 14
 ...processing 6 of 14
 ...processing 7 of 14
 ...processing 8 of 14
 ...processing 9 of 14
 ...processing 10 of 14
 ...processing 11 of 14
 ...processing 12 of 14
 ...processing 13 of 14
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 17
 ...processing 1 of 17
 ...processing 2 of 17
 ...processing 3 of 17
 ...processing 4 of 17
 ...processing 5 of 17
 ...processing 6 of 17
 ...processing 7 of 17
 ...processing 8 of 17
 ...processing 9 of 17
 ...processing 10 of 17
 ...processing 11 of 17
 ...processing 12 of 17
 ...processing 13 of 17
 ...processing 14 of 17
 ...processing 15 of 17
 ...processing 16 of 17
total clusters:40 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:40 now processing 0
total clusters:40 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
in cluster::shadow_cluster...
...finished clustering.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
adding statistics to annotations
Calculating annotation quality statistics
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:14 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:14 now processing 0
total clusters:14 now processing 0
 ...processing 0 of 11
 ...processing 1 of 11
 ...processing 2 of 11
 ...processing 3 of 11
 ...processing 4 of 11
 ...processing 5 of 11
 ...processing 6 of 11
 ...processing 7 of 11
 ...processing 8 of 11
 ...processing 9 of 11
 ...processing 10 of 11
total clusters:14 now processing 0
total clusters:14 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:14 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
choosing best annotation set
Choosing best annotations
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:14 now processing 0
total clusters:14 now processing 0
 ...processing 0 of 8
 ...processing 1 of 8
 ...processing 2 of 8
 ...processing 3 of 8
 ...processing 4 of 8
 ...processing 5 of 8
 ...processing 6 of 8
 ...processing 7 of 8
total clusters:14 now processing 0
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 2 of 13
 ...processing 3 of 13
 ...processing 4 of 13
 ...processing 5 of 13
 ...processing 6 of 13
 ...processing 7 of 13
 ...processing 8 of 13
 ...processing 9 of 13
 ...processing 10 of 13
 ...processing 11 of 13
 ...processing 12 of 13
total clusters:14 now processing 0
 ...processing 0 of 2
 ...processing 1 of 2
total clusters:14 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:14 now processing 0
 ...processing 0 of 4
 ...processing 1 of 4
 ...processing 2 of 4
 ...processing 3 of 4
total clusters:14 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139 thread 1.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415 thread 1.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287 thread 1.
 ...processing 13 of 20
processing chunk output
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:14 now processing 0
 ...processing 0 of 6
 ...processing 1 of 6
 ...processing 2 of 6
 ...processing 3 of 6
 ...processing 4 of 6
 ...processing 5 of 6
in cluster::shadow_cluster...
...finished clustering.
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:9 now processing 0
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
 ...trimming the rest
total clusters:9 now processing 0
 ...processing 0 of 9
 ...processing 1 of 9
 ...processing 2 of 9
 ...processing 3 of 9
 ...processing 4 of 9
 ...processing 5 of 9
 ...processing 6 of 9
 ...processing 7 of 9
 ...processing 8 of 9
total clusters:9 now processing 0
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 2 of 13
 ...processing 3 of 13
 ...processing 4 of 13
 ...processing 5 of 13
 ...processing 6 of 13
 ...processing 7 of 13
 ...processing 8 of 13
 ...processing 9 of 13
 ...processing 10 of 13
 ...processing 11 of 13
 ...processing 12 of 13
total clusters:9 now processing 0
 ...processing 0 of 6
 ...processing 1 of 6
 ...processing 2 of 6
 ...processing 3 of 6
 ...processing 4 of 6
 ...processing 5 of 6
total clusters:9 now processing 0
 ...processing 0 of 15
 ...processing 1 of 15
 ...processing 2 of 15
 ...processing 3 of 15
 ...processing 4 of 15
 ...processing 5 of 15
 ...processing 6 of 15
 ...processing 7 of 15
 ...processing 8 of 15
 ...processing 9 of 15
 ...processing 10 of 15
 ...processing 11 of 15
 ...processing 12 of 15
 ...processing 13 of 15
 ...processing 14 of 15
total clusters:9 now processing 0
total clusters:9 now processing 0
 ...processing 0 of 17
 ...processing 1 of 17
 ...processing 2 of 17
 ...processing 3 of 17
 ...processing 4 of 17
 ...processing 5 of 17
 ...processing 6 of 17
 ...processing 7 of 17
 ...processing 8 of 17
 ...processing 9 of 17
 ...processing 10 of 17
 ...processing 11 of 17
 ...processing 12 of 17
 ...processing 13 of 17
 ...processing 14 of 17
 ...processing 15 of 17
 ...processing 16 of 17
total clusters:9 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
total clusters:9 now processing 0
in cluster::shadow_cluster...
...finished clustering.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139.
Calling out to BioPerl Bio::DB::Fasta::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/Error.pm line 415.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
Calling FastaDB::new at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/FastaSeq.pm line 139.
Calling out to BioPerl get_PrimarySeq_stream at /sw/bioinfo/maker/3.01.1-beta-OMPI/bin/../lib/GI.pm line 2287.
annotating transcripts
Making transcripts
begin called get_best_alt_splices1
end called get_best_alt_splices1
begin called get_best_alt_splices1
 ...processing 0 of 12
 ...processing 1 of 12
 ...processing 2 of 12
 ...processing 3 of 12
 ...processing 4 of 12
 ...processing 5 of 12
 ...processing 6 of 12
 ...processing 7 of 12
 ...processing 8 of 12
 ...processing 9 of 12
 ...processing 10 of 12
 ...processing 11 of 12
end called get_best_alt_splices1
begin called get_best_alt_splices1
 ...processing 0 of 16
 ...processing 1 of 16
 ...processing 2 of 16
 ...processing 3 of 16
 ...processing 4 of 16
 ...processing 5 of 16
 ...processing 6 of 16
 ...processing 7 of 16
 ...processing 8 of 16
 ...processing 9 of 16
 ...processing 10 of 16
 ...processing 11 of 16
 ...processing 12 of 16
 ...processing 13 of 16
 ...processing 14 of 16
 ...processing 15 of 16
end called get_best_alt_splices1
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
begin called get_best_alt_splices1
 ...processing 0 of 10
 ...processing 1 of 10
 ...processing 2 of 10
 ...processing 3 of 10
 ...processing 4 of 10
 ...processing 5 of 10
 ...processing 6 of 10
 ...processing 7 of 10
 ...processing 8 of 10
 ...processing 9 of 10
end called get_best_alt_splices1
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
begin called get_best_alt_splices1
 ...processing 0 of 11
 ...processing 1 of 11
 ...processing 2 of 11
 ...processing 3 of 11
 ...processing 4 of 11
 ...processing 5 of 11
 ...processing 6 of 11
 ...processing 7 of 11
 ...processing 8 of 11
 ...processing 9 of 11
 ...processing 10 of 11
end called get_best_alt_splices1
 ...processing 0 of 5
 ...processing 1 of 5
 ...processing 2 of 5
 ...processing 3 of 5
 ...processing 4 of 5
begin called get_best_alt_splices1
 ...processing 0 of 15
 ...processing 1 of 15
 ...processing 2 of 15
 ...processing 3 of 15
 ...processing 4 of 15
 ...processing 5 of 15
 ...processing 6 of 15
 ...processing 7 of 15
 ...processing 8 of 15
 ...processing 9 of 15
 ...processing 10 of 15
 ...processing 11 of 15
 ...processing 12 of 15
 ...processing 13 of 15
 ...processing 14 of 15
end called get_best_alt_splices1
 ...processing 0 of 12
 ...processing 1 of 12
 ...processing 2 of 12
 ...processing 3 of 12
 ...processing 4 of 12
 ...processing 5 of 12
 ...processing 6 of 12
 ...processing 7 of 12
 ...processing 8 of 12
 ...processing 9 of 12
 ...processing 10 of 12
 ...processing 11 of 12
begin called get_best_alt_splices1
 ...processing 0 of 20
 ...processing 1 of 20
 ...processing 2 of 20
 ...processing 3 of 20
 ...processing 4 of 20
 ...processing 5 of 20
 ...processing 6 of 20
 ...processing 7 of 20
 ...processing 8 of 20
 ...processing 9 of 20
 ...processing 10 of 20
 ...processing 11 of 20
 ...processing 12 of 20
 ...processing 13 of 20
 ...processing 14 of 20
 ...processing 15 of 20
 ...processing 16 of 20
 ...processing 17 of 20
 ...processing 18 of 20
 ...processing 19 of 20
end called get_best_alt_splices1
 ...processing 0 of 2
 ...processing 1 of 2
begin called get_best_alt_splices1
 ...processing 0 of 13
 ...processing 1 of 13
 ...processing 2 of 13
 ...processing 3 of 13
 ...processing 4 of 13
 ...processing 5 of 13
 ...processing 6 of 13
 ...processing 7 of 13
 ...processing 8 of 13
 ...processing 9 of 13
 ...processing 10 of 13
 ...processing 11 of 13
 ...processing 12 of 13
end called get_best_alt_splices1
begin called get_best_alt_splices1
 ...processing 0 of 3
 ...processing 1 of 3
 ...processing 2 of 3
end called get_best_alt_splices1
 ...processing 0 of 14
 ...processing 1 of 14
 ...processing 2 of 14
 ...processing 3 of 14
 ...processing 4 of 14
 ...processing 5 of 14
 ...processing 6 of 14
 ...processing 7 of 14
 ...processing 8 of 14
 ...processing 9 of 14
 ...processing 10 of 14
 ...processing 11 of 14
 ...processing 12 of 14
 ...processing 13 of 14
$VAR1 = bless( {
                 'LAlnQ' => 837,
                 '_HAS_STOP' => undef,
                 'translation_end' => 1376,
                 '_length' => 1369,
                 '_f_id' => '0.483',
                 '_sequenceschanged' => 1,
                 '_algorithm' => 'exonerate::protein2genome',
                 'strand' => {
                               'query' => '-1',
                               'hit' => '1'
                             },
                 'evidence' => [
                                 'Q8J0D9.1'
                               ],
                 'queryLength' => 240068,
                 '_HAS_START' => 0,
                 '_hsps' => [
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                535
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    535
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 0
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               1070
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 225339,
                                                                                      '_end' => 225873
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           sub { "DUMMY" }
                                                                                         ],
                                                              '_source_tag' => 'est_gff:StringTie',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 535,
                                       'BITS' => 1070,
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    sub { "DUMMY" }
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                535
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    535
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 0
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               1070
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 1,
                                                                                      '_end' => 535
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'NG-13267_G14_lib199443_5490_1.2753.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'est_gff:StringTie',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'unitig_14|quiver',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 225873,
                                       'SCORE' => 535,
                                       'HIT_SEQ' => 'CTGAGGGTGCCCGTCATGGAGGGGGCGAGGCATCCTGTCGATGCTGTCAGCACATGGACCTTCCCTCTTGCAGCTCGAGGTGCCACTGGCGACCTTGGGTATGGGAGTCCCTAAGGGGAAGGTCAAGATAACGCTTGGGAGAGCATCGTCTGGCCTGACGAAGATAAATACAGGCTCCATGTCCGCTCCGAGAGGGAGATGCAAGGACAGAGCCAACGCGAGTCTAGTAGCTTCGTCCGCGATCGCCCCAAACAACAAGTCCCCGGCTAGTTAACTCACCATGCATCTCCTCACTTGGACCTCGTTCCTGTCCCTCACACTTGCGGCGCCCGTGATCTTGCCCAGGGCCAGCCAGCTCATTCCAGGCCACTACATCGTCAAGCTGAAGGACGGCGCGTCCGAGAGCAGCCTCCAGAACGCCATCAGCCATCTCAACTCGGCGCCGACCAAGCATGTCTACCGCGCAGGCAGCTTCAAGGGCTTCGCGGCCCCGCTGAGCCCGCAGGTGCTAGCGTCGCTTCGCAAGCTCCCCGAG',
                                       'HIT_NAME' => 'NG-13267_G14_lib199443_5490_1.2753.1',
                                       'HIT_LENGTH' => 535,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 0,
                                       'QUERY_START' => 225339,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[0]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 535,
                                       'EVALUE' => 0,
                                       'HSP_LENGTH' => 535,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'CTGAGGGTGCCCGTCATGGAGGGGGCGAGGCATCCTGTCGATGCTGTCAGCACATGGACCTTCCCTCTTGCAGCTCGAGGTGCCACTGGCGACCTTGGGTATGGGAGTCCCTAAGGGGAAGGTCAAGATAACGCTTGGGAGAGCATCGTCTGGCCTGACGAAGATAAATACAGGCTCCATGTCCGCTCCGAGAGGGAGATGCAAGGACAGAGCCAACGCGAGTCTAGTAGCTTCGTCCGCGATCGCCCCAAACAACAAGTCCCCGGCTAGTTAACTCACCATGCATCTCCTCACTTGGACCTCGTTCCTGTCCCTCACACTTGCGGCGCCCGTGATCTTGCCCAGGGCCAGCCAGCTCATTCCAGGCCACTACATCGTCAAGCTGAAGGACGGCGCGTCCGAGAGCAGCCTCCAGAACGCCATCAGCCATCTCAACTCGGCGCCGACCAAGCATGTCTACCGCGCAGGCAGCTTCAAGGGCTTCGCGGCCCCGCTGAGCCCGCAGGTGCTAGCGTCGCTTCGCAAGCTCCCCGAG',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 1,
                                       'HIT_END' => 535,
                                       'QUERY_LENGTH' => 535,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'est_gff:StringTie',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::gff3' ),
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                186
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    186
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 225101,
                                                                                      '_end' => 225286
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 186,
                                       'BITS' => '530',
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    $VAR1->{'_hsps'}[0]{'_root_cleanup_methods'}[1]
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                186
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    186
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 536,
                                                                                      '_end' => 721
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'Q8J0D9.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'Q8J0D9.1',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 225286,
                                       'SCORE' => 186,
                                       'HIT_SEQ' => 'GTCGAGTTCATCGAGCAAGACGCCGTGGTAACCATCAACAGCGTCGTCACTCAGAACAACGTCCCCTGGGGCCTGGCGCGCATTTCGCACCGCCAGGTCAACGCCACGACGTACCTGTACGACTCGAGCGCAGGGACGGGCACCTGCGCCTACATCATCGACACGGGCATCCAAGTGAACCACACC',
                                       'HIT_NAME' => 'Q8J0D9.1',
                                       'HIT_LENGTH' => 186,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 'NA',
                                       'QUERY_START' => 225101,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[1]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 186,
                                       'EVALUE' => 'NA',
                                       'HSP_LENGTH' => 186,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'GTCGAGTTCATCGAGCAAGACGCCGTGGTAACCATCAACAGCGTCGTCACTCAGAACAACGTCCCCTGGGGCCTGGCGCGCATTTCGCACCGCCAGGTCAACGCCACGACGTACCTGTACGACTCGAGCGCAGGGACGGGCACCTGCGCCTACATCATCGACACGGGCATCCAAGTGAACCACACC',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 536,
                                       'HIT_END' => 721,
                                       'QUERY_LENGTH' => 186,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'exonerate::protein2genome',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::protein2genome' ),
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                442
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    442
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 224587,
                                                                                      '_end' => 225028
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 442,
                                       'BITS' => '530',
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    $VAR1->{'_hsps'}[0]{'_root_cleanup_methods'}[1]
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                442
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    442
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 722,
                                                                                      '_end' => 1163
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'Q8J0D9.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'Q8J0D9.1',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 225028,
                                       'SCORE' => 442,
                                       'HIT_SEQ' => 'CAATTCGAAGGCCGGGCCACGTTCCTGGCCAACTTCATCGACAGCACGGATACGGACCTGAACGGGCACGGCACGCACGTGGCCGGCACGACGGGGTCGGCGGCGTACGGCGTGGCCAAGCAGACGCGCCTGTTCGGCGTCAAGGTGCTCGACGCGAGCGGCTCGGGCTCGCTGTCGTCCGTGATCGCGGGCATCGACTTCGTCGCGTCGGACAGCGCCAACCGCACGGCCGCCGGCCAGTGCGCCAACGGCAGCGTCGCCAACATGAGCCTCGGCTCCGGCAGGTCCAGCACGGTCAACGCGGCCGTCGCGTCCGCCGTCGCCAAGGGCGTGTTCTTCGCCGTCGCGGCCGGGAACAGCGACGACGATGCCGCGTTTTACTCGCCCGCGTCCGAGCCGACGGCGTGCACCGTCGGCGCGACGGACTCGTCGGATGCCAGGG',
                                       'HIT_NAME' => 'Q8J0D9.1',
                                       'HIT_LENGTH' => 442,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 'NA',
                                       'QUERY_START' => 224587,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[2]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 442,
                                       'EVALUE' => 'NA',
                                       'HSP_LENGTH' => 442,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'CAATTCGAAGGCCGGGCCACGTTCCTGGCCAACTTCATCGACAGCACGGATACGGACCTGAACGGGCACGGCACGCACGTGGCCGGCACGACGGGGTCGGCGGCGTACGGCGTGGCCAAGCAGACGCGCCTGTTCGGCGTCAAGGTGCTCGACGCGAGCGGCTCGGGCTCGCTGTCGTCCGTGATCGCGGGCATCGACTTCGTCGCGTCGGACAGCGCCAACCGCACGGCCGCCGGCCAGTGCGCCAACGGCAGCGTCGCCAACATGAGCCTCGGCTCCGGCAGGTCCAGCACGGTCAACGCGGCCGTCGCGTCCGCCGTCGCCAAGGGCGTGTTCTTCGCCGTCGCGGCCGGGAACAGCGACGACGATGCCGCGTTTTACTCGCCCGCGTCCGAGCCGACGGCGTGCACCGTCGGCGCGACGGACTCGTCGGATGCCAGGG',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 722,
                                       'HIT_END' => 1163,
                                       'QUERY_LENGTH' => 442,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'exonerate::protein2genome',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::protein2genome' ),
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                83
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    83
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 224383,
                                                                                      '_end' => 224465
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 83,
                                       'BITS' => '530',
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    $VAR1->{'_hsps'}[0]{'_root_cleanup_methods'}[1]
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                83
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    83
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 1164,
                                                                                      '_end' => 1246
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'Q8J0D9.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'Q8J0D9.1',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 224465,
                                       'SCORE' => 83,
                                       'HIT_SEQ' => 'CCTGGTTCTCGAATTACGGCTCCGTCGTCGATGTGTTTGCGCCCGGGGTAGACGTGCTGAGCAGCTGGATCGGGGCGAGCGGG',
                                       'HIT_NAME' => 'Q8J0D9.1',
                                       'HIT_LENGTH' => 83,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 'NA',
                                       'QUERY_START' => 224383,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[3]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 83,
                                       'EVALUE' => 'NA',
                                       'HSP_LENGTH' => 83,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'CCTGGTTCTCGAATTACGGCTCCGTCGTCGATGTGTTTGCGCCCGGGGTAGACGTGCTGAGCAGCTGGATCGGGGCGAGCGGG',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 1164,
                                       'HIT_END' => 1246,
                                       'QUERY_LENGTH' => 83,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'exonerate::protein2genome',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::protein2genome' ),
                              bless( {
                                       'feature1' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                123
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    123
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 224192,
                                                                                      '_end' => 224314
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'unitig_14|quiver',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       'IDENTICAL' => 123,
                                       'BITS' => '530',
                                       'HIT_GAPS' => 0,
                                       'QUERY_GAPS' => 0,
                                       '_root_cleanup_methods' => [
                                                                    $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0],
                                                                    $VAR1->{'_hsps'}[0]{'_root_cleanup_methods'}[1]
                                                                  ],
                                       'feature2' => bless( {
                                                              '_gsf_frame' => '0',
                                                              '_gsf_tag_hash' => {
                                                                                   'score' => [
                                                                                                123
                                                                                              ],
                                                                                   'SeqLength' => [
                                                                                                    123
                                                                                                  ],
                                                                                   'signif' => [
                                                                                                 'NA'
                                                                                               ],
                                                                                   'Bits' => [
                                                                                               '530'
                                                                                             ]
                                                                                 },
                                                              '_location' => bless( {
                                                                                      '_strand' => 0,
                                                                                      '_location_type' => 'EXACT',
                                                                                      '_start' => 1247,
                                                                                      '_end' => 1369
                                                                                    }, 'Bio::Location::Simple' ),
                                                              '_gsf_seq_id' => 'Q8J0D9.1',
                                                              '_parse_h' => {},
                                                              '_root_cleanup_methods' => [
                                                                                           $VAR1->{'_hsps'}[0]{'feature1'}{'_root_cleanup_methods'}[0]
                                                                                         ],
                                                              '_source_tag' => 'exonerate::protein2genome',
                                                              'annotation' => bless( {
                                                                                       '_typemap' => bless( {
                                                                                                              '_type' => {
                                                                                                                           'comment' => 'Bio::Annotation::Comment',
                                                                                                                           'reference' => 'Bio::Annotation::Reference',
                                                                                                                           'dblink' => 'Bio::Annotation::DBLink'
                                                                                                                         }
                                                                                                            }, 'Bio::Annotation::TypeManager' ),
                                                                                       '_annotation' => {}
                                                                                     }, 'Bio::Annotation::Collection' )
                                                            }, 'Bio::SeqFeature::Similarity' ),
                                       '_strand_hack' => {
                                                           'query' => -1,
                                                           'hit' => 1
                                                         },
                                       'queryName' => 'Q8J0D9.1',
                                       '_gsf_tag_hash' => {},
                                       '_created_qff' => 1,
                                       'QUERY_END' => 224314,
                                       'SCORE' => 123,
                                       'HIT_SEQ' => 'AACACCATCTCGGGCACCTCGATGGCCACGCCGCATATCACGGGCCTCGGCGCGTACCTGCTGGGCCTGCTGGGCCGCACCACGCCCGCCCAGCTCTGCCAGCACATCAAGGACATCGCCACG',
                                       'HIT_NAME' => 'Q8J0D9.1',
                                       'HIT_LENGTH' => 123,
                                       'QUERY_NAME' => 'unitig_14|quiver',
                                       '_making_sff' => 0,
                                       '_hit_factor' => 0,
                                       '_query_factor' => 0,
                                       'PVALUE' => 'NA',
                                       'QUERY_START' => 224192,
                                       'GAP_SYMBOL' => '-',
                                       'HOMOLOGY_SEQ' => '|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||',
                                       '_parse_h' => {},
                                       '_sim1' => $VAR1->{'_hsps'}[4]{'feature1'},
                                       '_hit_mapping' => 1,
                                       'STRANDED' => 'NONE',
                                       '_sequenceschanged' => 1,
                                       'CONSERVED' => 123,
                                       'EVALUE' => 'NA',
                                       'HSP_LENGTH' => 123,
                                       '_making_qff' => 0,
                                       'QUERY_SEQ' => 'AACACCATCTCGGGCACCTCGATGGCCACGCCGCATATCACGGGCCTCGGCGCGTACCTGCTGGGCCTGCTGGGCCGCACCACGCCCGCCCAGCTCTGCCAGCACATCAAGGACATCGCCACG',
                                       'feature_factory' => bless( {
                                                                     'interface' => 'Bio::SeqFeatureI',
                                                                     'type' => 'Bio::SeqFeature::Similarity',
                                                                     '_loaded_types' => {
                                                                                          'Bio::SeqFeature::Similarity' => 1
                                                                                        },
                                                                     '_root_verbose' => 0
                                                                   }, 'Bio::Factory::ObjectFactory' ),
                                       '_finished_new' => 1,
                                       'HIT_START' => 1247,
                                       'HIT_END' => 1369,
                                       'QUERY_LENGTH' => 123,
                                       '_query_mapping' => 1,
                                       'ALGORITHM' => 'exonerate::protein2genome',
                                       '_created_sff' => 1
                                     }, 'Bio::Search::HSP::PhatHSP::protein2genome' )
                            ],
                 '_iterator' => 0,
                 '_description' => 'Q8J0D9.1',
                 'LAlnH' => 276,
                 'translation_offset' => 538,
                 '_was_flipped' => 0,
                 '_score' => 1369,
                 '_name' => 'Q8J0D9.1',
                 'database_name' => '/tmp/maker_ODcpaW/1/blastprep/uniprot_sprot%2Eclean.mpi.10.2',
                 '_root_verbose' => 0,
                 'nE' => {
                           'query' => 224192,
                           'hit' => 1369
                         },
                 'nB' => {
                           'query' => 225873,
                           'hit' => 1
                         }
               }, 'Bio::Search::Hit::PhatHit::protein2genome' );
Bio::Search::Hit::PhatHit::protein2genome=HASH(0x7f187ebe8338) 1369 end:1376
-------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
SIGTERM thread
[bnode-05:06156] *** Process received signal ***
[bnode-05:06156] Signal: Segmentation fault (11)
[bnode-05:06156] Signal code:  (0)
[bnode-05:06156] Failing at address: (nil)
[bnode-05:06156] [ 0] /lib64/libc.so.6[0x3282832510]
[bnode-05:06156] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3285095012]
[bnode-05:06156] [ 2] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06156] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3285094ff0]
[bnode-05:06156] [ 4] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06156] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x32828e91b3]
[bnode-05:06156] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x2b3cb7214f56]
[bnode-05:06156] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x2b3cb721a716]
[bnode-05:06156] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x2b3cb729f32d]
[bnode-05:06156] [ 9] /lib64/libpthread.so.0[0x3283407aa1]
[bnode-05:06156] [10] /lib64/libc.so.6(clone+0x6d)[0x32828e8bbd]
[bnode-05:06156] *** End of error message ***
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM thread
SIGTERM received
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM thread
[bnode-05:06153] *** Process received signal ***
[bnode-05:06153] Signal: Segmentation fault (11)
[bnode-05:06153] Signal code:  (0)
[bnode-05:06153] Failing at address: (nil)
[bnode-05:06153] [ 0] /lib64/libc.so.6[0x3282832510]
[bnode-05:06153] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3285095012]
[bnode-05:06153] [ 2] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06153] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3285094ff0]
[bnode-05:06153] [ 4] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06153] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x32828e91b3]
[bnode-05:06153] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x2b472a11cf56]
[bnode-05:06153] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x2b472a122716]
[bnode-05:06153] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x2b472a1a732d]
[bnode-05:06153] [ 9] /lib64/libpthread.so.0[0x3283407aa1]
[bnode-05:06153] [10] /lib64/libc.so.6(clone+0x6d)[0x32828e8bbd]
[bnode-05:06153] *** End of error message ***
SIGTERM received
SIGTERM thread
SIGTERM received
[bnode-05:06151] *** Process received signal ***
[bnode-05:06151] Signal: Segmentation fault (11)
[bnode-05:06151] Signal code:  (0)
[bnode-05:06151] Failing at address: (nil)
[bnode-05:06151] [ 0] /lib64/libc.so.6[0x3282832510]
[bnode-05:06151] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3285095012]
[bnode-05:06151] [ 2] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06151] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3285094ff0]
[bnode-05:06151] [ 4] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06151] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x32828e91b3]
[bnode-05:06151] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x2acab3163f56]
[bnode-05:06151] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x2acab3169716]
[bnode-05:06151] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x2acab31ee32d]
[bnode-05:06151] [ 9] /lib64/libpthread.so.0[0x3283407aa1]
[bnode-05:06151] [10] /lib64/libc.so.6(clone+0x6d)[0x32828e8bbd]
[bnode-05:06151] *** End of error message ***
SIGTERM thread
SIGTERM thread
[bnode-05:06159] *** Process received signal ***
[bnode-05:06159] Signal: Segmentation fault (11)
[bnode-05:06159] Signal code:  (0)
[bnode-05:06159] Failing at address: (nil)
[bnode-05:06159] [ 0] /lib64/libc.so.6[0x3282832510]
[bnode-05:06159] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3285095012]
[bnode-05:06159] [ 2] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06159] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3285094ff0]
[bnode-05:06159] [ 4] /lib64/libpthread.so.0[0x328340f7e0]
[bnode-05:06159] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x32828e91b3]
[bnode-05:06159] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x2b424cc19f56]
[bnode-05:06159] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x2b424cc1f716]
[bnode-05:06159] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x2b424cca432d]
[bnode-05:06159] [ 9] /lib64/libpthread.so.0[0x3283407aa1]
[bnode-05:06159] [10] /lib64/libc.so.6(clone+0x6d)[0x32828e8bbd]
[bnode-05:06159] *** End of error message ***
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM thread
SIGTERM received
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM received
SIGTERM thread
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM received
SIGTERM thread
SIGTERM received
SIGTERM thread
[bnode-07:25848] *** Process received signal ***
[bnode-07:25848] Signal: Segmentation fault (11)
[bnode-07:25848] Signal code:  (0)
[bnode-07:25848] Failing at address: (nil)
[bnode-07:25848] [ 0] /lib64/libc.so.6[0x3cb2c32510]
[bnode-07:25848] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3cb4895012]
[bnode-07:25848] [ 2] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25848] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3cb4894ff0]
[bnode-07:25848] [ 4] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25848] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x3cb2ce91b3]
[bnode-07:25848] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x7fd88c0e3f56]
[bnode-07:25848] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x7fd88c0e9716]
[bnode-07:25848] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x7fd88c16e32d]
[bnode-07:25848] [ 9] /lib64/libpthread.so.0[0x3cb3807aa1]
[bnode-07:25848] [10] /lib64/libc.so.6(clone+0x6d)[0x3cb2ce8bbd]
[bnode-07:25848] *** End of error message ***
SIGTERM thread
SIGTERM received
SIGTERM received
SIGTERM thread
SIGTERM thread
SIGTERM received
SIGTERM received
SIGTERM thread
SIGTERM thread
[bnode-07:25858] *** Process received signal ***
[bnode-07:25858] Signal: Segmentation fault (11)
[bnode-07:25858] Signal code:  (0)
[bnode-07:25858] Failing at address: (nil)
[bnode-07:25858] [ 0] /lib64/libc.so.6[0x3cb2c32510]
[bnode-07:25858] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3cb4895012]
[bnode-07:25858] [ 2] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25858] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3cb4894ff0]
[bnode-07:25858] [ 4] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25858] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x3cb2ce91b3]
[bnode-07:25858] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x7fce71331f56]
[bnode-07:25858] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x7fce71337716]
[bnode-07:25858] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x7fce713bc32d]
[bnode-07:25858] [ 9] /lib64/libpthread.so.0[0x3cb3807aa1]
[bnode-07:25858] [10] /lib64/libc.so.6(clone+0x6d)[0x3cb2ce8bbd]
[bnode-07:25858] *** End of error message ***
SIGTERM thread
[bnode-07:25862] *** Process received signal ***
[bnode-07:25862] Signal: Segmentation fault (11)
[bnode-07:25862] Signal code:  (0)
[bnode-07:25862] Failing at address: (nil)
[bnode-07:25862] [ 0] /lib64/libc.so.6[0x3cb2c32510]
[bnode-07:25862] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x3cb4895012]
[bnode-07:25862] [ 2] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25862] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x3cb4894ff0]
[bnode-07:25862] [ 4] /lib64/libpthread.so.0[0x3cb380f7e0]
[bnode-07:25862] [ 5] /lib64/libc.so.6(epoll_wait+0x33)[0x3cb2ce91b3]
[bnode-07:25862] [ 6] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0xb0f56)[0x7fd831420f56]
[bnode-07:25862] [ 7] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(opal_libevent2022_event_base_loop+0x1f6)[0x7fd831426716]
[bnode-07:25862] [ 8] /sw/openmpi/2.1.2/lib/libopen-pal.so.20(+0x13b32d)[0x7fd8314ab32d]
[bnode-07:25862] [ 9] /lib64/libpthread.so.0[0x3cb3807aa1]
[bnode-07:25862] [10] /lib64/libc.so.6(clone+0x6d)[0x3cb2ce8bbd]
[bnode-07:25862] *** End of error message ***
SIGTERM received
SIGTERM thread
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:

  Process name: [[52309,1],18]
  Exit code:    2
--------------------------------------------------------------------------
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From chenjunhui at bgi.com  Wed Dec 13 02:56:46 2017
From: chenjunhui at bgi.com (=?gb2312?B?s8K+/LvUKEp1bmh1aSBDaGVuKQ==?=)
Date: Wed, 13 Dec 2017 09:56:46 +0000
Subject: [maker-devel] =?gb2312?b?UHJvYmxlbSBvZiBtYWtlcqO/?=
Message-ID: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>

Dear Dr?
Gooddays for you.

Recently, we used maker software to annotate our genome. However, we found that some annoted genes utr region was out of the scaffold as following:
sc0000223       maker   five_prime_UTR  101136  101159
sc0000223      0      101142

Would you like to give us some suggetions and help about this problem?
Many thanks for your help and suggestions

Look forward from you.


Best regards
Yours, hui

??? ???????
??????????
???????????????21??????7??518083
?????0755-36307095
??: chenjunhui at genomics.cn<mailto:chenjunhui at genomics.cn>

[??: ??: ??: ??: ??: ??: ??: ??: ??: cid:image003.jpg at 01D20520.996633B0]
________________________________
????
?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

















































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From carsonhh at gmail.com  Thu Dec 14 09:48:57 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 14 Dec 2017 09:48:57 -0700
Subject: [maker-devel] =?utf-8?q?Problem_of_maker=EF=BC=9F?=
In-Reply-To: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>
References: <HK2PR0601MB1873B4536A7DCA894E2A2745DC350@HK2PR0601MB1873.apcprd06.prod.outlook.com>
Message-ID: <B653630D-87AB-46CF-8865-BA68CA3478D8@gmail.com>

Hi Hui,

1. Make sure you are not using a very old version of MAKER. Current stable version is 2.31.9
2. If you are using GFF3 input as part of your run, then the issue may be in the input GFF3 file (MAKER gets the coordinates from the file you give it).
3. Delete and rerun the contig in question. The lines you gave in your example are missing columns, which may have just been a cut and paste mistake, but if not, then it?s an IO error - failure to print full line - which just needs to be rerun (can sometimes happen with slow NFS file systems).
4. Make sure you have current version of BioPerl (current CPAN version and not BioPerl-live).


The only previous occurrence of a start position issue with MAKER ( https://groups.google.com/forum/#!searchin/maker-devel/start$20position%7Csort:date/maker-devel/Yzn6XTm2aas/J2IOGyWXbVMJ ) involved the use of a very old MAKER installation together with bad installation of some prerequisites.


Thanks,
Carson



> On Dec 13, 2017, at 2:56 AM, ???(Junhui Chen) <chenjunhui at bgi.com> wrote:
> 
> Dear Dr?
> Gooddays for you.
>  
> Recently, we used maker software to annotate our genome. However, we found that some annoted genes utr region was out of the scaffold as following:
> sc0000223       maker   five_prime_UTR  101136  101159
> sc0000223      0      101142
>  
> Would you like to give us some suggetions and help about this problem?
> Many thanks for your help and suggestions
>  
> Look forward from you.
>  
>  
> Best regards
> Yours, hui
>  
> ??? ???????
> ?????????? 
> ???????????????21??????7??518083
> ?????0755-36307095
> ??: chenjunhui at genomics.cn <mailto:chenjunhui at genomics.cn>
>  
> <image001.jpg>
> ????
> ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
>  
>  
>  
>  
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>  
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> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com <mailto:maker-devel at box290.bluehost.com>
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>
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From qwzhang0601 at gmail.com  Thu Dec 21 08:06:50 2017
From: qwzhang0601 at gmail.com (Quanwei Zhang)
Date: Thu, 21 Dec 2017 10:06:50 -0500
Subject: [maker-devel] how the maker2 pipeline deal with a Ns sequence
Message-ID: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>

Hello:

I wonder how the maker2 pipeline deals with a 1kb or 100bp NN sequences in
a scafold, especially when such sequences within a gene region?

Recently, we improved a rodent genome. However, at a few certain regions we
filled the gap with both sequences and Ns sequences. We found some
predicted genes in the old assembly lost in our new assembly. By looking
deep into the region, the gene region in the new assembly highly match the
old assembly at both ends of the gene, where covered most predicted coding
sequences (predicted in the old assembly). The only difference is shown in
the middle of the gene with some new sequence and Ns sequences. Attached in
the alignments between sequence in the old and new assembly in the gene
region (Y coordinate shows the new assembly).

Many thanks and Merry Christmas

Best
Quanwei
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From carsonhh at gmail.com  Thu Dec 21 09:49:23 2017
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 21 Dec 2017 09:49:23 -0700
Subject: [maker-devel] how the maker2 pipeline deal with a Ns sequence
In-Reply-To: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>
References: <CAOW6FSJLPPOaP5VGTAtA7YQXig=fKio-m1nVcX_S2wjwsxtxbQ@mail.gmail.com>
Message-ID: <8A736E44-5D13-408D-A60D-9F843C6D9104@gmail.com>

MAKER doesn?t do anything special for stretches of N?s. They still will be run through each step, just producing empty results in most cases for the region. Programs MAKER uses like BLAST will not align to N?s, so any alignment must either happen around the N?s for short stretches or no result is produced for long stretches (results will be produced in regions where the N?s stop). Also gene predictors will not include N?s in their models, so the N?s will either occur within the intron, or will be skipped over entirely.

?Carson


> On Dec 21, 2017, at 8:06 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I wonder how the maker2 pipeline deals with a 1kb or 100bp NN sequences in a scafold, especially when such sequences within a gene region?
> 
> Recently, we improved a rodent genome. However, at a few certain regions we filled the gap with both sequences and Ns sequences. We found some predicted genes in the old assembly lost in our new assembly. By looking deep into the region, the gene region in the new assembly highly match the old assembly at both ends of the gene, where covered most predicted coding sequences (predicted in the old assembly). The only difference is shown in the middle of the gene with some new sequence and Ns sequences. Attached in the alignments between sequence in the old and new assembly in the gene region (Y coordinate shows the new assembly).
> 
> Many thanks and Merry Christmas
> 
> Best
> Quanwei   
> <hit_matrix.png>_______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org