[maker-devel] genes longer than contig in maker

[lucile.soler at bils.se]

Hello,

 I am using maker3 to annotate a lizard.


The maker part went well but then when I want to do the functional annotation, it seems that for some contigs maker has created genes outside of the contig size.

 For instance :


 XXX1   maker gene    2          26717            .           -           .           ID=maker-XXX1_pilon-augustus-gene-0.8;Name=maker-XXX1_pilon-augustus-gene-0.8


XXX1   maker mRNA 2          26717            .           -           .           ID=maker- XXX1_pilon-augustus-gene-0.8-mRNA-1;Parent=maker-XXX1_pilon-augustus-gene-0.8;Name=maker-XXX1_pilon-augustus-gene-0.8-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.5|1|0.4|0.33|6|5291|105

XXX1   maker mRNA 2          26717            .           -           .           ID=maker-XXX1_pilon-augustus-gene-0.8-mRNA-2;Parent=maker-XXX1_pilon-augustus-gene-0.8;Name=maker-XXX1_pilon-augustus-gene-0.8-mRNA-2;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.4|1|0.25|0.4|5|4442|170

and the length of the contig is 26696


 

Any idea of what could have happened? Have you seen that already?

 

Let me know what more information you need to answer.

Thank you very much for your help,





Lucile Soler

PhD in Bioinformatics
Genome Annotation Platform
NBIS (National Bioinformatics Infrastructure Sweden)
mail:lucile.soler at bils.se

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