[maker-devel] how to deal with Contigs to run maker?

[dcg at cau.edu.cn]

Dear sir:
    After assemblying, I got many contigs and their order in each chromosome.
    What I have done is merging these contigs into each chromosomes followed by the order, with 100 Ns inserted betwwen each contigs. So that I got chr1 chr2......Then I ran the repeatmodeler, predictor to annotate it.

    Could my way reach a high-quality result? Should I use all the contigs to mask repeats and practice predictor?
    Is there any better way to do genome-wide annotation?

    I'm looking forward to your reply!
    Best wishes!
     
Chao Chao


2017.02.28
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