[maker-devel] Problem with fgenesh protein IDs

[Carson Holt]

The issue is probably with the format of your GFF3. I can take a look if you want.

—Carson


> On Feb 5, 2017, at 6:15 AM, Alisa Postma <alisa.postma at gmail.com> wrote:
> 
> Good afternoon
> 
> I am having problems with my all.maker.proteins.fasta file.
> 
> I ran maker with ab initio gene predictions from augustus and genemark and I added my fgenesh gff file to the pred_gff option in the ctl file.
> 
> However, my maker protein fasta file does not give the fgenesh proteins IDs similar to that for augustus and genemark. 
> 
> For example: 
> >FGENESH protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|3|0|433
> 
> vs.
> 
> 
> >maker-scaffold74-augustus-gene-0.179-mRNA-1 protein AED:0.07 eAED:0.07 QI:123|1|1|1|1|1|5|793|326
> 
> I would appreciate any advice on this matter.
> 
> Kind regards
> 
> Alisa
> 
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