[maker-devel] GFF3 file format

[Scott Cain]

Hi Maya,

I'm not sure what MAKER's requirements are in this regard--I'm forwarding
this to their mailing list.

Scott


On Wed, Jan 25, 2017 at 3:12 PM, Maya Britstein <mayabritstein at gmail.com>
wrote:

> Hi,
>
> I have RNA-seq data, and genomic data that I want to annotate using maker.
>
> From what I understood, I need to genarate a gff3 file format from the
> RNA-seq mapping sequences. I had mapped the RNA sequences to the genome
> using bowtie and tophat. However, I still do not know how to take these
> format and convert them to a gff3 file that I can them use in maker as
> annotation evidence
>
> I saw the wiki page, that did not mention how to make this conversion (
> http://gmod.org/wiki/GFF3)
>
> Can you please help me?
>
> Sincerely,
> Maya
>
> ----
> Maya Britstein
> Ph.D candidate
> Laura Steindler's Lab
> Marine Biology Department
> Leon H. Charney School of Marine Sciences
> University of Haifa, Israel
>
>


-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research
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