[maker-devel] Unable to train SNAP

[Xabier Vázquez-Campos]

Are you using the -n option with maker2zff? You often get empty genome.ann
and genome.dna files if you don't.

On 5 January 2017 at 21:07, Oleg Lovky <olegl at volcani.agri.gov.il> wrote:

> Hello,
>
>
>
> I’m running Maker (2.31.8) with a genome and mRNA evidence (est2genome=1)
> containing ~50k reads (length ranges from 70 to 12000).
>
> However, I’m not getting transcript and proteins fasta files at all,
> despite Maker not giving any errors and everything is listed as finished in
> the datastore log file.
>
> Furthermore, when trying to use maker2zff I’m getting empty genome.ann and
> genome.dna files.
>
>
>
> Please advise.
>
>
>
> Regards,
>
>
>
> Oleg Lovky, MSc.
>
> Research Engineer
>
> Institute of Plant Sciences
>
> ARO, Volcani Center
>
> Cell: 054-4870319
>
> [image: v95_15]
>
>
>
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>
>


-- 
Xabier Vázquez-Campos, *PhD*
*Research Associate*
Water Research Centre
School of Civil and Environmental Engineering
The University of New South Wales
Sydney NSW 2052 AUSTRALIA
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