[maker-devel] MAKER annotation post processing

[Patrick Tran Van]

Hi,

I have successfully annotated my genome with MAKER. Now I have a gff file that I want to post process /filter.


In particular, I would like to discard genes that are below to a certain AED score.


1) Is there an AED treshold from where a gene is not strongly supported ? if yes, do you have some reference about this ?


2) Is there a script/software to process a gff file ?


Thanks



Patrick Tran Van

Groups Chapuisat, Robinson-Rechavi & Schwander
Department of Ecology and Evolution
University of Lausanne
Le Biophore
CH-1015 Lausanne
Switzerland
Office 3206

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