[maker-devel] Maker annotation of large scaffolds

[Aravind PRASAD]

Hi All,

I'm trying to annotate a fish genome using Maker pipeline. It could finish the annotation for maximum scaffolds except 5 of them which are of size around 100M base pairs. The current clusters in our institute has a time limit of 24hrs for a job and these scaffolds could not be annotated with in that time.
Can you please suggest any other way of finishing the annotation for large scaffolds?

I thought of chunking up the scaffolds to run, but, I'm afraid that would split a gene into two.
Thanks for your time.

Regards,
Aravind PRASAD<mailto:aravindp at imcb.a-star.edu.sg> :: Research Officer :: Comparative and Medical Genomics Lab :: Institue of Molecular and Cell Biology (IMCB) :: Agency for Science, Technology and Research (A*STAR)
61 Biopolis Drive :: #5-04 Proteos :: Singapore 138673:: DID (+65) 6586 9573 :: Fax (+65) 6779 1117 :: http://www.imcb.a-star.edu.sg/

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