[maker-devel] How to merge the annotation results into chromosomes?

[Ence,daniel]

Hi,

Do you have data that can precisely place each of your contigs in their position on the chromosome? Without that, this isn’t even possible, since a gff3 file with the chromosomes instead of the contigs requires each contig’s position in the chromosome.

And in any case, I don’t think there is a script in the maker tools that does what you’re asking. Maybe someone else has made a script to do that.

~Daniel




On Mar 6, 2017, at 7:24 AM, dcg at cau.edu.cn<mailto:dcg at cau.edu.cn> wrote:

Dear sir:
    Hello, I am doing my utmost to sdudy on annotation now.
    However,  I have been confused  on results handlng recently. After alignment, practice and curation, we can get good gene model and merge them by gff_merge and fasta_merge.      But how can I merge them into different chromosomes like Homo_sapiens.GRCh38.87.chromosome.11.gff3.gz? I don't just want results of different contigs.

    I'm looking forward to your reply. Thanks a lot!
    Best wishes!

Chao Chao
________________________________
2017.03.06
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