[maker-devel] For help about masking repeats before annotation

[Michael Campbell]

Hi Chao Chao,

I’ve not run into this before. Could you post the RepeatModeler command you used?

Thanks,
Mike
> On Mar 5, 2017, at 6:26 AM, dcg at cau.edu.cn wrote:
> 
> Dear sir:
>        Before the maker opeations, I do repeat masking first on my contigs. 
>        However , when I followed " Repeat Library Construction-Advanced ",  no results generated after I running LTRharvest. So I couldn't do any further.
>        
>        When I attempted to follow" Repeat Library Construction-Basic " to run RepeatModeler, a note caused my attention even though RECON can return some results :
>        NOTE: RepeatScout did not return any models.
> 
>        Is the situation above normal in masking progress? How can I deal with the problems to make a high-quality repeat library for my assemblied contigs?
> 
>        Hope to hear from you.
>        Best wishes!
> 
> Chao Chao
> 2017.03.05
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