[maker-devel] Why my maker get no results?

[dcg at cau.edu.cn]

Dear sir:
    I' have bben working on genome annotation these days.My process in as below:
    
    1. I split my contigs into 300 parts and deal with them simultaneously to speed up my process. 
    2. I used my splited-genome, protein, ESTs and RNA-seq to make the first alignment( est2genome=1,  AED_threshold=0.2 ). 
    3. Merge the maker.*_.master_datastore_index.log to get all the paths of results.
    4. gff_merge script to merge all the results in different dirs.

    However, there is no results returned. (My genome is about 3GB, but the gff of result is none.)
    index_all.log.all.gff    1KB
    index_all.log.all.maker.proteins.fasta    2837KB
    index_all.log.all.maker.transcripts.fasta    9866KB




    Where can the problems take place?
    Thanks!
Yours sincerely.

Chao Chao


dcg at cau.edu.cn
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