[maker-devel] Why my maker get no results?

[Carson Holt]

You can merge datastore indexes that way. You will need to run them separately (i.e. unmodified location and content from what MAKER gave you), and then merge the fasta and gff3 files afterwards.

—Carson


> On May 1, 2017, at 7:32 AM, dcg at cau.edu.cn wrote:
> 
> Dear sir:
>     I' have bben working on genome annotation these days.My process in as below:
>     
>     1. I split my contigs into 300 parts and deal with them simultaneously to speed up my process. 
>     2. I used my splited-genome, protein, ESTs and RNA-seq to make the first alignment( est2genome=1,  AED_threshold=0.2 ). 
>     3. Merge the maker.*_.master_datastore_index.log to get all the paths of results.
>     4. gff_merge script to merge all the results in different dirs.
> 
>     However, there is no results returned. (My genome is about 3GB, but the gff of result is none.)
>     index_all.log.all.gff    1KB
>     index_all.log.all.maker.proteins.fasta    2837KB
>     index_all.log.all.maker.transcripts.fasta    9866KB
> 
> 
> 
> 
>     Where can the problems take place?
>     Thanks!
> Yours sincerely.
> 
> Chao Chao
> dcg at cau.edu.cn <mailto:dcg at cau.edu.cn>_______________________________________________
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