[maker-devel] RepeatMasker: NCBIBlastSearchEngine::search: Error

[Ence,daniel]

Hi, the error is regarding a specific file (is.lib) which isn’t being found. Can you verify that the file is there after you updated Repbase? Use the command:
“ls -l /home/softwares/RepeatMasker/Libraries/20170127/general/is.lib”

Thanks,
Daniel Ence


On May 3, 2017, at 8:15 AM, 卢金原Jim <jim03ljy at 126.com<mailto:jim03ljy at 126.com>> wrote:

Hi, I'm a newbie of maker.
I met some errors in Repeatmasker step.

The error is here:
NCBIBlastSearchEngine::search: Error...compressed subject database (/home/softwares/RepeatMasker/Libraries/20170127/general/is.lib) does not exist!

I tried ncbi+blast 2.5.0 version and 2.6.0 version as the path to blast, both have the same error.
And when I use the command as "maker -R", which skips the repeatmasker step, the maker could work.
I checked the former similar errors reported by another user and he solved the problem by  updating the RepBase.
So,
  I deleted and re-installed the RepeatMasker, updated the RepBase,  also installed RMblast.
The error is the same.

I'm stuck in the problem now.
Would highly appreciate any help - thanks!

Jinyuan Lu
Shanghai Jiao Tong University
No. 800 Dong Chuan Road,Minhang District,  Shanghai, P.R. China
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