[maker-devel] Post Processing of Annotations

[Carson Holt]

Use blastp with the the tab delimited format option and the UniProt/Swiss-Prot database. What additional filters you choose to set (i.e. e-value limit) may vary, although I would recommend 1e-6 or lower.

—Carson

> On May 3, 2017, at 10:19 AM, Nathan Ricks <nathan.ricks at gmail.com> wrote:
> 
> Hi,
> I've been running your Maker pipeline, and I've reached Post Processing of Annotations portion. In your Online training you use the output.blastp and the outuput.iprscan files to help assign function.
> My question is what format do these files need to be in.
> Iprscan can produce files in a variety of formats: tsv, xml, gff3, html and SVG
> while blastp can produce the tabular, pairise, xml and a number of others.
> 
> Thanks
> 
> Nathan Ricks
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