[maker-devel] want coding sequences

[Carson Holt]

Use the fasta_tool utility with —trim_maker_utr to get just the CDS part of each transcript.

—Carson



> On May 10, 2017, at 9:48 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> Thanks for development and maintenance of the tool "Maker2".  We have used Maker2 to do genome annotation of a new rodent species. Now we are doing downstream analysis, which requires inputs of coding sequences from different species. 
> 
> I found the outputs I got from Maker2 only include protein sequences and transcripts. Is there an easy way that I can get the coding sequences for our annotated genome?
> 
> Many thanks
> 
> Best
> Quanwei
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