[maker-devel] Maker gene vs snap match in final GFF's

[Carson Holt]

MAKER results can be the result of additional hints sent to SNAP together with post processing to add UTR and additional exons that have support form transcript evidence. MAKER results will also have support from either protein or EST/mRNA evidence. SNAP match is simply the raw ab initio call made by SNAP (no hints, no post processing, and may or may not have evidence supporting the structure). They are there just for reference purposes. so you know what SNAP will produce outside of MAKER given the underlying HMM.

—Carson



> On May 11, 2017, at 12:29 PM, Marcus Naymik <mnaymik at tgen.org> wrote:
> 
> In the final GFF annotations what is the difference between a 'gene' from maker and a 'match' from snap?
> 
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