[maker-devel] About eAED

Quanwei Zhang qwzhang0601 at gmail.com
Wed Oct 4 16:31:09 MDT 2017


Hello:

I ran the maker2 pipeline and got the default gene sets (with AED<1). But I
found there are several hundred genes with eAED 1.

Below is an example, the gene has AED 0.05 and eAED 1. I wonder what can be
the reason of the great difference between AED and eAED. For this gene it
has a very low AED score, is it still a reliable gene model if its eAED
equals 1?

>maker-Contig2656-snap-gene-269.6-mRNA-1 protein AED:0.05 eAED:1.00
QI:75|0|0|1|0|0|2|111|35

Thanks

Best
Quanwei
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20171004/a5158804/attachment-0002.html>


More information about the maker-devel mailing list