[maker-devel] Error with Maker_functional_gff

[Emmanuel Nnadi]

Hello,
I intend to rename genes for Genebank submission

I downloaded swissprot.fa from NCBI and used blast MAKER generated file to
swissprot.

the output of BLAST RESULT looks like this

snap_masked-contig_8151-processed-gene-0.8-mRNA-1       P10978.1
49.315  73      37      0       43      115     874     946     2.61e-14
    71.6


I attempted to run maker_funtional_gff using the swissprot.fa downloaded
and the blastp result


I got the following result

Use of uninitialized value $id in hash element at
/Users/emmannaemeka/Desktop/Gpm/maker/bin/maker_functional_gff line 139,
<$IN> line 2897906.

Use of uninitialized value $id in hash element at
/Users/emmannaemeka/Desktop/Gpm/maker/bin/maker_functional_gff line 141,
<$IN> line 2897906.

Can't parse details from FASTA header: >P11684.1 RecName: Full=Uteroglobin;
AltName: Full=Clara cell phospholipid-binding protein; Short=CCPBP;
AltName: Full=Clara cells 10 kDa secretory protein; Short=CC10; AltName:
Full=Secretoglobin family 1A member 1; AltName: Full=Urinary protein 1;
Short=UP-1; Short=UP1; Short=Urine protein 1; Flags: Precursor



Use of uninitialized value $id in hash element at
/Users/emmannaemeka/Desktop/Gpm/maker/bin/maker_functional_gff line 139,
<$IN> line 1608599.

Use of uninitialized value $id in hash element at
/Users/emmannaemeka/Desktop/Gpm/maker/bin/maker_functional_gff line 141,
<$IN> line 1608599.

Can't parse details from FASTA header: >Q9HZU2.1 RecName: Full=Precorrin-8X
methylmutase; AltName: Full=HBA synthase; AltName: Full=Precorrin isomerase


What can I do?



Nnadi Nnaemeka Emmanuel
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20171002/03fd3814/attachment-0002.html>