[maker-devel] How to remove contigs from GFF file

Emmanuel Nnadi eennadi at gmail.com
Thu Oct 26 15:34:33 MDT 2017


Hello,

I need to remove sequences from my GFF file can someone help me with
command line for such removal

ERROR: valid [SEQ_FEAT.FeatureBeginsOrEndsInGap] Feature begins or ends in
gap starting at 17625 FEATURE: Gene: CR513_57782 <46071>
 [lcl|contig_14719:17653-17724] [lcl|contig_14719: delta, dna len= 17790]
ERROR: valid [SEQ_INST.ShortSeq] Sequence only 2 residues BIOSEQ:
gnl|aceprd|CR513_62412: raw, aa len= 2

Nnadi Nnaemeka Emmanuel
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
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