[maker-devel] jbrowse not working

[Carson Holt]

Is muc1_genome_snap2.all.gff missing embedded fasta entries at the end of the file? That can happen if you use the -n option with gff3_merge. Alternatively it’s possible one of the individual contig gff3 used to build the merged gff3 is truncated. If that is the case then gff3_merge should have thrown some sort of error or warning when you run it.

Thanks,
Carson




> On Oct 7, 2017, at 3:34 PM, Emmanuel Nnadi <eennadi at gmail.com> wrote:
> 
> Please,
> I ran the command line
> 
> maker2jbrowse muc1_genome_snap2.all.gff
> 
> The command created some folders. However, at the end it read
> No reference sequences defined in configuration, nothing to do.
> 
> Please what does it mean? How can I view it in jbrowse. 
> 
> Thanks
> 
> 
> Nnadi Nnaemeka Emmanuel
> Department of Microbiology,
> Faculty of Natural and Applied Science,
> Plateau State University, Bokkos, Plateau State, Nigeria.
> Publications:  https://www.researchgate.net/profile/Emmanuel_Nnadi/publications <https://www.researchgate.net/profile/Emmanuel_Nnadi/publications>
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