[maker-devel] Genemark XXX.mod files

[Jennifer Anderson]

Hello,

I am working on annotations for fungal genomes, using GenemarkES with —fungi for gene prediction.  In earlier attempts, I did not use the  training flag, and I did get the output gmhmm file.  Now I have tried with the training flag and do not get this file.  In the /run/ directory I do get mod files  ES_A.mod, ES_B.mod, and ES_C.mod, as well as ini.mod.  Does one of these files work as the ES.mod file as in
"gmhmm=../train_genemark/es.mod #GeneMark HMM file” from http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/The_MAKER_control_files_explained? I don’t find documentation of the genemarkES output online.

Thank you.

Jenni









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