[maker-devel] Genemark XXX.mod files

[Jason Stajich]

the run/ES_C.mod should be the right one if it is there.
It is possible is crashing on one of the training / retraining?

Jason Stajich
jason.stajich at gmail.com


On Tue, Jul 3, 2018 at 11:05 AM Jennifer Anderson <
jennifer.anderson at ebc.uu.se> wrote:

>
> Hello,
>
> I am working on annotations for fungal genomes, using GenemarkES with
> —fungi for gene prediction.  In earlier attempts, I did not use the
>  training flag, and I did get the output gmhmm file.  Now I have tried with
> the training flag and do not get this file.  In the /run/ directory I do
> get mod files  ES_A.mod, ES_B.mod, and ES_C.mod, as well as ini.mod.  Does
> one of these files work as the ES.mod file as in
> "gmhmm=../train_genemark/es.mod #GeneMark HMM file” from
> http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/The_MAKER_control_files_explained? I
> don’t find documentation of the genemarkES output online.
>
> Thank you.
>
> Jenni
>
>
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>
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