[maker-devel] MAKER beta not inferring gene models from protein evidence

[Timo Metz]

Hey guys,

I have installed Maker v3 beta in order to use the built-in
Evidence-Modeler which is not part of v2.31. Now I could see that, even if
using the same evidence, the BUSCO completeness of the transcriptome drops
when using the v3 beta compared to the v2.31. I could identify the reason
leading to this was that MAKER v3 now does not infer gene models from
Protein evidence if there is no additional support from RNA-seq/ests. In
v2.31 it did, on the contrary. Is there any option in v3 beta to also get
gene models only from protein evidence or is this something that v3 beta is
not able to do anymore?

best
Timo
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