[maker-devel] Speed up maker annotation on long scaffolds

[Yiyuan Li]

Dear Maker support,
I have a quick question about annotating chromosome-level scaffolds. I have a new genome assembly from Hi-C data. The top 4 scaffolds are chromosome-level, which are ~100-170M bp long. I tried to use Maker MPI but it runs slow. Each scaffold has been running for weeks. I was wondering if you may have any suggestions on how to make the annotation process faster? 

Thank you! 

YY