[maker-devel] Apply old maker gff to new assembly

[Carson Holt]

Here is an archived post that covers this topic —> https://groups.google.com/forum/#!searchin/maker-devel/est_forward%7Csort:date/maker-devel/gDbvTknuep4/gDiGCMgjCQAJ <https://groups.google.com/forum/#!searchin/maker-devel/est_forward|sort:date/maker-devel/gDbvTknuep4/gDiGCMgjCQAJ>

This will help map old structural models to new coordinates. Moving functional data may take some additional work. You might even want to rerun domain finders like interproscan rather than just copying old domain coordinates.

—Carson


> On Nov 15, 2019, at 2:26 PM, Boyher, Adam <ABoyher at danforthcenter.org> wrote:
> 
> Hi
> I'm a bit unsure of how to apply a previous maker annotation to a new
> assembly. I just want a quick annotation, so just taking the genes that
> are already in the annotation file with their functional annotations
> and naming schemes and find those genes in the new assembly. Which
> settings should i use in maker_opts.ctl?
> 
> Thanks
> Adam
> _______________________________________________
> maker-devel mailing list
> maker-devel at yandell-lab.org
> http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20191202/7ee151aa/attachment-0003.html>