[maker-devel] Is Maker running without progressing?

[Loïc]

Hello,

I am running MAKER for 3 weeks on a large plant genome with a 
significant evidence dataset, my job seems in appearance to be running 
properly as it uses the allocated CPUs and the run folder is actualized 
every minute. However, MAKER stopped writing in the logfile after one 
day (in the middle of a step, see below). It is actually the second time 
I have the problem, I killed a first time the job as the logfile didn't 
change in a week and launched back the annotation based on the previous 
run repository.

As it has been three weeks since it runs without visible results, would 
it be possible that the process is running without making any progress? 
Is there a way to assess the annotation state?

Logfile end:
...
total clusters:2 now processing 0
  ...processing 0 of 3
  ...processing 1 of 3
  ...processing 2 of 3
total clusters:2 now processing 0
  ...processing 0 of 2
  ...processing 1 of 2


Could you help me?


Here are the logfiles of the two analysis: 
https://edc.ulg.ac.be/merci/maker_run_logs_4af3cd16577f3e870597_.zip


Thank you for reading this message.

Best regards,

Loïc Meunier

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