[maker-devel] tRNAscan-SE file already exists

[Seth Munholland]

Hi Everyone,

Just getting my latest Maker install running and I'm running into the
following issue when it gets to tRNAscan-SE:

running  trnascan.
#--------- command -------------#
Widget::trnascan:
/usr/local/bin/tRNAscan-SE -b -q
/tmp/maker_5C2HGK/Chr01_94779-3233013.abinit_no
mask.0 >
/tmp/maker_5C2HGK/Chr01_94779-3233013.abinit_nomask.0.eukaryotic.trnasc
an
#-------------------------------#

WARNING: -q exists already.

 (O)verwrite file, (A)ppend to file, or (Q)uit program?

I have tRNAscan-SE-2.0 installed, which has a -b option for a bed output
but needs a file to be specified.  Do I need to roll back to a specific
version or would it be easier to skip it and run tRNAscan-SE separately?
Do the outputs get integrated later to adjsut Maker calls or are they stand
alone?

Seth Munholland, Ph.D. Candidate
Intern, International Society for Computational Biology
VP, Finance & Extracurricular Affairs, DBGSA
Department of Biological Sciences
Rm. 306 Biology Building
University of Windsor
401 Sunset Ave. N9B 3P4
T: (519) 253-3000 Ext: 4755
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20190116/e93d52f6/attachment-0002.html>