[maker-devel] genome annnotation by maker

[djerroud samia]

Hello,

 I am trying to do the structural annotation of procaryotic genomes and
metagenomes. I want to get the positions with the sequence of cds and the
gaps. Something like that:

 gene            478..1299
                     /locus_tag="DU99_RS00005"
                     /old_locus_tag="DU99_00005"
     CDS             478..1299
                     /locus_tag="DU99_RS00005"
                     /old_locus_tag="DU99_00005"
                     /function="miscellaneous; hypothetical/global homology"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_384107.1"
                     /note="Derived by automated computational analysis
using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase regulatory
protein"
                     /protein_id="WP_010968285.1"

 /translation="MENRKNYFHLHLISDSTGETLIAAGRAAAAQFQSSHALEHVYPL

 IRNRKQLMQVMDAVDGAPGIVLYTIVDRELAGLIDQRCREIGVPCVSVLDPIIELFQS

 YLGSPSRRRSGAQHVMDAEYFARIEALNFTMDHDDGQVPSDFNEADVVLVGVSRTSKT

 PTSIYLANRGIKTANIPIVPGVPLPDALLKATKPLIVGLIASAERLSQVRQHRVLGTT

 QSFHGEDYTDRAAIAEELKYARSLCARNNWPLIDVTRRSIEETAAAIVALRPRLR"


Do you think that maker can help me to do that ?? IF so what is the part of
maker that can do that ?? I will really appreciate if you help me :)

Thank you,
Samia
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