[maker-devel] MAKER and tRNAscan

[李青 Li, Qing]

Hi Nazila,
The right one to contact is Carson and Maker developer group (cced).
best,
Qing

On Wed, May 22, 2019 at 6:39 AM Koochekian, Nazila <koochen at miamioh.edu>
wrote:

> Dear Maker group
> My name is Nazila, I am a Ph.D. student at Miami University. I'm working
> on *Phrynosoma platyrhinos *genome annotation and I'm trying to use
> MAKER. So as a requirement I'm trying to use tRNAscan. First I used the
> latest version (2.0) and I got the first -q file but I faced a warning like
> this:
>
> WARNING: -q exists already.
>
>  (O)verwrite file, (A)ppend to file, or (Q)uit program?
>
> And I tried overwrite and append but it just froze and didn't work anymore.
> So I tried to use an older version (1.3.1) but this one is hard to make it
> work too. I'm getting an error:
>
> Can't locate object method "new" via package "tRNAscanSE::Constants"
> (perhaps you forgot to load "tRNAscanSE::Constants"?) at
> /home/koochen/tRNAscan-SE-1.3.1/tRNAscan-SE line 57.
>
> Would you please help me with it? Which version should I use? And how
> could I solve the problem for that version?
> Looking forward for your reply;
> Thanks,
> Nazila
>
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