[maker-devel] Failed to run maker after install

[Carson Holt]

Install live version of BioPerl, then reinsall MAKER against that —> https://github.com/bioperl/bioperl-live <https://github.com/bioperl/bioperl-live>

There is a BioPerl related issue with Inline::C that has been fixed.

—Carson



> On May 22, 2019, at 5:51 AM, Abdulmalek Algarni <atalgarni at gmail.com> wrote:
> 
> Hi there,
> 
> I having a problem when running maker after installing it following the installation instructions. All the excutables located at …/maker/bin works show no error, except for the maker it show an error :
> 
> Abdulmaleks-Mac-Pro:bin abdulmalek$ ./maker -h
> Couldn't find an appropriate DIRECTORY for Inline to use.
> 
>  at /Library/Perl/5.18/Bio/DB/IndexedBase.pm line 251.
> BEGIN failed--compilation aborted at /Library/Perl/5.18/Bio/DB/IndexedBase.pm line 282.
> Compilation failed in require at (eval 27) line 2.
> 	...propagated at /System/Library/Perl/5.18/base.pm line 84.
> BEGIN failed--compilation aborted at /Library/Perl/5.18/Bio/DB/Fasta.pm line 137.
> Compilation failed in require at ./maker line 62.
> BEGIN failed--compilation aborted at ./maker line 62.
> 
> 
> For the other excutables here is an example :
> Abdulmaleks-Mac-Pro:bin abdulmalek$ ./cegma2zff 
> 
> Usage:
>      cegma2zff <cegma_gff> <genome_fasta>
> 
>      This script converts the output GFF file from CEGMA into ZFF format
>      for use in SNAP training.  Output files are always genome.ann and
>      genome.dna.
> 
> 
> 
> Best regards,
> 
> Abdulmalek
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