[maker-devel] maker-devel post from jgrant at smith.edu requires approval

[Carson Holt]

MAKER on its own can run under MPI to run on multiple cores or across multiple machines on a local computer cluster. It can also restart as long as you run in the same directory. However when controlled by Galaxy I do not know if the restart is possible since Galaxy controls the run directory. Similarly I don’t know if Galaxy can launch it via MPI.

—Carson


> From: Jessica Grant <jgrant at smith.edu>
> Subject: Possible to restart maker run through a local galaxy?
> Date: August 6, 2020 at 12:06:57 PM MDT
> To: maker-devel at yandell-lab.org
> 
> 
> Hi,
> 
> I have a local galaxy instance and installed maker through the tool shed.  I have been running it on a large genome and it had been running on one core for a few weeks.  Then my IT guys needed to take the server down so  stopped the run.  
> 
> I wonder if I can restart it - I have all the intermediate files in my /galaxy/database/jobs_directory and also, is there a way to run it on multiple cores?
> 
> Thank you!
> 
> Jessica
> 
> 
> 
> From: maker-devel-request at yandell-lab.org
> Subject: confirm 6c52cdc17b7f8c4718d930157625ecc62c32c681
> Date: August 6, 2020 at 12:07:14 PM MDT
> 
> 
> If you reply to this message, keeping the Subject: header intact,
> Mailman will discard the held message.  Do this if the message is
> spam.  If you reply to this message and include an Approved: header
> with the list password in it, the message will be approved for posting
> to the list.  The Approved: header can also appear in the first line
> of the body of the reply.
> 

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20200821/f1ffc36e/attachment-0002.html>