[maker-devel] Illegal division by zero while polishing ESTs

[Ovidiu Paun]

Hi

I have been using maker to annotate a genome and all went fine. However I
have obtained a new transcriptome (from a Trinity assembly) and implemented
it as a EST fasta file. Since then I get errors for some of the contigs (but
not all!):

 

Illegal division by zero at /usr/local/maker/bin/../lib/GI.pm line 1695.

--> rank=NA, hostname=8767v89

ERROR: Failed while polishig ESTs

ERROR: Chunk failed at level:2, tier_type:3

FAILED CONTIG:scaffold21

 

I checked the transcriptome fasta file and apart from the fact that it is
pretty large (ca 500k contigs), I do not see any errors.

I would greatly appreaciate any help.

Best wishes

Ovidiu Paun

 

Assoc.-Prof. Dr. Ovidiu Paun

Department of Botany and Biodiversity Research

University of Vienna

 <http://plantgenomics.univie.ac.at> http://plantgenomics.univie.ac.at 

 

 

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20200122/a980fb27/attachment-0003.html>