[maker-devel] Error: FASTA header doesn't match '>(\S+)'

[Emily Abernathy]

Hello,
    I am running MAKER for the first time and I have been unable to resolve
an error. The error is as follows:
[image: image.png]
I am using a genome that I assembled in Supernova v2 with headers that
resemble this:
>1 edges=1057764..867844 left=488686 right=145511 ver=1.10 style=3

and I downloaded two fasta files from ENSEMBL whose headers resemble this:
>ENSTGUT00000018018.1 cdna
chromosome:taeGut3.2.4:8_random:2849599:2959678:-1
gene:ENSTGUG00000017338.1 gene_biotype:protein_coding
transcript_biotype:protein_coding

and

>ENSTGUP00000017615.1 pep chromosome:taeGut3.2.4:23_random:205321:209117:1
gene:ENSTGUG00000017337.1 transcript:ENSTGUT00000018017.1
gene_biotype:protein_coding transcript_biotype:protein_coding

These are my only input FASTA files and I have been struggling to fix this
error for almost a month now. Any and all advice on how to fix this error
is much appreciated!

Thanks in advance,
E. Abernathy



-- 
Emily Abernathy
Graduate Group in Ecology
University of California, Davis
http://hulllabucd.wix.com/hulllab
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