[maker-devel] repeatmasker output gff

[Homa Papoli]

Hello,

I have 2 questions regarding user maker:

I have used repeatmasker for my genome separately and I have a gff file.
However, my gff file, in the third column, has the word "similarity". In a
workshop I had taken on genome annotation, it was said that the gff for
maker should have "match" and "match_part" for the third column. I was
wondering whether I could use the original gff output of repeatmasker or
should I make any changes to it?

Another question is about running maker. Since maker takes several days to
run, if the job gets interrupted due to limit in days of running the job, I
was wondering whether it is possible to re-start maker from where it got
interrupted?

Thank you,
Homa
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