[maker-devel] How do I make maker combine interproscan and functional_gff results

[Emmanuel Nnadi]

Hi Carson,
Please I will like to know how to combine the gff results obtained
using  ipr_update_gff
and the gff obtained using maker_functional_gff?
For example the ipr_update_gff adds the following to the gff

scaffold_252    maker   gene    22873   47327   .       -       .
 ID=CR513_001491;Name=CR513_001491;Alias=augustus_masked-scaffold_252-processed-gene-0.0;Dbxref=InterPro:IPR000719,Pfam:PF00069;Ontology_term=GO:0004672,GO:0005524,GO:0006468;
      ID=CR513scaffold_252    maker   mRNA    22873   47327   .       -
  .
ID=CR513_001491-RA;Parent=CR513_001491;Name=CR513_001491-RA;Alias=augustus_masked-scaffold_252-processed-gene-0.0-mRNA-1;Dbxref=InterPro:IPR000719,Pfam:PF00069;Ontology_term=GO:0004672,GO:0005524,GO:0006468;_AED=0.50;_QI=0|0.08|0.04|0.16|1|1|25|0|927;_eAED=0.50;_merge_warning=1;


While
maker_functional_gff

scaffold_252    maker   gene    22873   47327   .       -       .
ID=CR513_001491;Name=CR513_001491;Alias=augustus_masked-scaffold_252-processed-gene-0.0;Note=Similar
to IREH1: Putative serine/threonine protein kinase IREH1 (Fragment) (Mucuna
pruriens OX%3D157652);scaffold_252    maker   mRNA    22873   47327   .
  -       .
ID=CR513_001491-RA;Parent=CR513_001491;Name=CR513_001491-RA;Alias=augustus_masked-scaffold_252-processed-gene-0.0-mRNA-1;_AED=0.50;_QI=0|0.08|0.04|0.16|1|1|25|0|927;_eAED=0.50;_merge_warning=1;Note=Similar
to IREH1: Putative serine/threonine protein kinase IREH1 (Fragment) (Mucuna
pruriens OX%3D157652); (Fragment) (Mucuna pruriens OX%3D157652);


Is there a way of making maker reflect the GO and pfam alongside the
functional names?



Also, how can this be reflected in the corresponding protein and transcript
fastas?


Thanks for your support.



Nnaemeka Emmanuel Nnadi,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
 https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
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