[maker-devel] Does maker support muti-processing for a single long fasta sequence using openMPI?

Xu, taosheng taosheng.x at gmail.com
Sat Oct 17 00:48:06 MDT 2020


Dear Maker Development Team,
I wonder whether maker supports parallel processing for a single long
genome sequence?

When I submit my maker task using openMPI with multiple cpus (like, mpiexec
-n 40  maker) to annotate a single long genome sequence, always only one
maker with 4 rmblast run. The other cpus is on idle.

I want to use the maker parallel processing with openMPI to speed up a
single ultra-long genome sequence annotation.

Best regards,
Taosheng
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